BAC Information

Click to search

BAC

Clone NameMSMg01-496E06
Chromosome7 (Build37)
Map Location 90,041,846 - 90,042,147
singlet/doubletsinglet
Overlap genenone
Upstream geneHdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3
Downstream geneLOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496E06.T7 (MSMg01no496_e06.b1)MSMg01-496E06.TJ (MSMg01no496_e06.g1)
ACCAG573112AG573113
length605743
length of high quality
(start - end)
---571 (83 - 653)
definitionCHROMAT_FILE: MSMg01no496_e06.b1 PHD_FILE: MSMg01no496_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:32 2005CHROMAT_FILE: MSMg01no496_e06.g1 PHD_FILE: MSMg01no496_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACCCCCCGGGATGAAGCCCTAAAAAAAATTTTCGGGAGGAGTGAGAAGA
ANTCTCCTTCGGCACTCCGGAGACGATATACCTTACCGCCACCAGCCTTA
TAATAAACGCCCATTGCCCCTATATTCTGCGCCGCCTCCACGCTGTCCTA
ATCCCCAAGAACAATCCTAAATCCCTCAGAAAAAGTAATACCCCCCCCCA
CCTTCTCGGAATTTTGTCGGAATAAAGCATGGGGAGCCAGGCAAGCGCGA
TAGATTCGCGTTAAGCCGTNNNGTCCCCCCCCAAAAAAAATGGCGGGCCG
GCTAAAACGACTCATCTCAGGGGAAAGGATCCGCGGAATTCATTCTTAAC
ACCTGGTGGCCTTTAATGTAGTTGCATTTTTTTTCAGACTCTGGCATTTG
CGTGAGCCCTTTTCCTGTATTGACAGAGCCTCTCTTAAATCATACCTTTC
CAAAAACTTGAAATTCTAACTTGGANGAGCCTTGGAAAGAAGGTAGGAAA
ATAAAACCCCCCCCCTTTTAAAAAGGGCCCCAAAGGGGGAAAAGAAATCC
CCCCCCCCAGGGGGGAAAAAAGGGTGGAAACCCCCAGGGGGCCCACAAAA
AAAAC
GGAGGAGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCCTCCAAGAGAATCTCTTTCCATACAGCAG
AAGAGGAAAGATGGAGAGGCGAAGGACCATGGTGGTAGGCTTCCCAAACA
CATTACTTGACCTGAGTCCATCAGTGATGAATACAGCCCCTGGGATTCTC
CTGTGTGTCTCTATGCTGGAATTACAGGTGACACTGCTATGCTCAACTTG
TTACATGTGATGTGTGCTAGGGATGCAAACTCTGGTCCCTATGCTTGCAC
AGTGAGTAAACACTTTATCCACTGTTTTTATCTGTAGATGTAGATTTCTT
TGAGATGCTGTGCACTTTTGCCCCGCCCCCTTTTTCTTTTTTTTTCTTTT
TTTTATAATATTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTA
TCCCAAAAGTCCCCCATACCCTCCCCCCCACTTCCCTACCCACCCATTCC
CATTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATACAGTTTGCG
TGTCCAATGGGCCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTTTTGA
TACATATGCAGCTAGAGTCAAGAGCTCCGCCCCCTTTTTCTAGCTCACTT
CGAAGTCAGATCCATTGGTCCCATCAAGCATTTCTTCATATGGATTGCAN
GACAGTCAAGTTGCCTAACTGCACATAGGCCCTGACATTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_e06.g1 MSMg01no496_e06.g1 CHROMAT_FILE:
MSMg01no496_e06.g1 PHD_FILE: MSMg01no496_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:32 2005
         (571 letters)



>mm_chr7_90041846_90042816
          Length = 971

 Score =  551 bits (285), Expect = e-161
 Identities = 298/307 (97%), Gaps = 9/307 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctttccatacagcagaagaggaaagatggagaggcgaaggaccatggtggtaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctctttccatacagcagaagaggaaagatggagaggcgaaggaccatggtggtaggctt 243

                                                                       
Query: 61  cccaaacacattacttgacctgagtccatcagtgatgaatacagcccctgggattctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cccaaacacattacttgacctgagtccatcagtgatgaatacagcccctgggattctcct 183

                                                                       
Query: 121 gtgtgtctctatgctggaattacaggtgacactgctatgctcaacttgttacatgtgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gtgtgtctctatgctggaattacaggtgacactgctatgctcaacttgttacatgtgatg 123

                                                                       
Query: 181 tgtgctagggatgcaaactctggtccctatgcttgcacagtgagtaaacactttatccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgtgctagggatgcaaactctggtccctatgcttgcacagtgagtaaacactttatccac 63

                                                                       
Query: 241 tg----tttttatctgtagatgtagatttctttgagatgctgtgcacttttgccccgccc 296
           ||         |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  tgggcc-----atctgtagatgtagatttctttgagatgctgtgcacttttgccccgccc 8

                  
Query: 297 ccttttt 303
           |||||||
Sbjct: 7   ccttttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)