BAC Information

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BAC

Clone NameMSMg01-497B22
Chromosome7 (Build37)
Map Location 131,773,911 - 131,774,543
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628779
Downstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497B22.T7 (MSMg01no497_b22.b1)MSMg01-497B22.TJ (MSMg01no497_b22.g1)
ACCAG573764AG573765
length716763
length of high quality
(start - end)
213 (58 - 270)610 (75 - 684)
definitionCHROMAT_FILE: MSMg01no497_b22.b1 PHD_FILE: MSMg01no497_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:41 2005CHROMAT_FILE: MSMg01no497_b22.g1 PHD_FILE: MSMg01no497_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGGCGGNNTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTTGAGATGTTCAAACAAATTAATCAAGGCCAA
AGAATGGGCTGTTGCGATTCTAGTTTATAGCTAGGCAAAAGGACAGGTNT
AAAGAACATGGGGGTTTGCCACAGATGTCTGAAATGTAGGTGGGGACAGT
TTGGGAAGTAATTTCTGATGCCATTTCCAGGTGGATAGTGTCTGCTGTGA
TCACATTAGTGGATCTTCACCTGGTGTCCATCAAACACAAGTGATCAGTT
ACTCACTGGGGAGAAAATTCTTATACATATGGGGTCAGTGATCTAGGTTG
ATTGTAATGTGAAAAGACTTTGGGAAAAGCAACCATTTTGTCCTGGAACG
ACCCTTGGCGATTGAGCCAAAAAATAGGAAAAAATTCTTTGGGGGGAAAA
TCCTGGCCGGAAAATGGGAAAGGGGTTTCCCAAAATAAATTCCGGGAGAA
GGGGGTCAAAAAACATCCCGGGCCTGGGGAAAAAAAGGGGGTTTTCCCGG
GTGGAAGGGGGGGCCCCTTTTTAAAAAGAGGAAAACCCCCGGGGGAAAGC
TCTTTTTTTTATAAAAAAAGAGGGGGGGGCGGGGGTTTTTTATTTTGGGG
GGAAAAAATTTTTTCCCCCCAATTTTTTGGGAAAACCCCTTTTTTTTTAT
AATAAAAAAAAAAAAA
ACGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTTTAACTTTCCGGCTTTTTGT
TCTCCACCCACAGAATGCAGTTGGATGCAGAGTGCAGGAAGAGTTTGCTT
CTGGGCAGAGGAAAGCAGGCCCTCAAAGATAAGGGTAGGCGATGGGTGAA
GGGCCCACAGTCCTGACCTGCATTTGAAGCTGGCTGACTTATCTAAAGCT
GGTAGCTTCTCTAGGGGTGAAGCACACCTGTGTGGATGTTTGACTTGTAT
AGGGAGGGTCTATGGATTACCAGAAAGCCTCTGGCTGAGTAGCGCTGTGC
CATGGCTCACAGTTGTCTGCTAATGAGTTCCAGGCAGGGCAGACTGTCTG
GTCTCCACCTAATTTCTTTTATCAAGGTCCAGCTCAGTGACCTCCTACTC
CATTCTGACTCACTGCCCTGTACCACCACACTTGGCTCCCATCACTTTAA
TAACCAAACATTTAAAACAAACAAACAAACAAACAAACAAAGAGGCTGCC
AATCTTCTGGGTAAAACCTGAGAATGCTTTTCTCTGCTCTGCTGTCCAGC
TTGGCCCTTGACCACTCGATCTACTTTTGCTGCGTGTTTCTCCCATTCAG
AGTGATTCAAGGCTAAATTTAGTGGTTTCCTTGATTCTTAGACAAATATA
GTAAAAACAGAATGTTTATGGACATTTTACTTTGAGATGTGGCAAAGCTA
TTAGGATTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_b22.g1 MSMg01no497_b22.g1 CHROMAT_FILE:
MSMg01no497_b22.g1 PHD_FILE: MSMg01no497_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:41 2005
         (610 letters)



>mm_chr7_131773734_131774743
          Length = 1010

 Score = 1031 bits (533), Expect = 0.0
 Identities = 599/635 (94%), Gaps = 27/635 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctttaactttccggctttttgttctccacccacagaatgcagttggatgcagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tcacctttaactttccggctttttgttctccacccacagaatgcagttggatgcagagtg 237

                                                                       
Query: 61  caggaagagtttgcttctgggcagaggaaagcaggccctcaaagataagggtaggcgatg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 238 caggaagagtttgcttctgggcagaggaaagcaggccctcaaaggtaagggtaggcgatg 297

                                                                       
Query: 121 ggtgaagggcccacagtcctgacctgcatttgaagctggctgacttatctaaagctggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggtgaagggcccacagtcctgacctgcatttgaagctggctgacttatctaaagctggta 357

                                                                       
Query: 181 gcttctctaggggtgaagcacacctgtgtggatgtttgacttgtatagggagggtctatg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtttctctaggggtgaagcacacctgtgtggatgtttgacttgtatagggagggtctatg 417

                                                                       
Query: 241 gattaccagaaagcctctggctgagtagcgctgtgccatggctcacagttgtctgctaat 300
           || ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 418 gactaccagaaagcctctggctgagtagtgctgtgtcatggctcacagttgtctgctaat 477

                                                                       
Query: 301 gagttccaggcagggcagactgtctggtctccacctaatttcttttatcaaggtccagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gagttccaggcagggcagactgtctggtctccacctaatttcttttatcaaggtccagct 537

                                                                       
Query: 361 cagtgacctcctactccattctgactcactgccctgtaccaccacacttggctcccatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cagtgacctcctactccattctgactcactgccctgtaccaccacacttggctcccatca 597

                                                                       
Query: 421 ctttaataaccaaacatttaaaacaaa----------caaa-caa---ac---------a 457
           |||||||||||||||||  |||| |||          |||| |||   ||         |
Sbjct: 598 ctttaataaccaaacat--aaaaaaaaaaaaaaaaaacaaaacaaccaaccaaccaatca 655

                                                                       
Query: 458 aacaaacaaa--gaggctgccaatcttctgggtaaaacctgagaatgcttttctctgctc 515
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aacaaacaaacagaggctgccaatcttctgggtaaaacctgagaatgcttttctctgctc 715

                                                                       
Query: 516 tgctgtccagcttggcccttgaccactcgatctacttttgctgcgtgtttctcccattca 575
           |||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 716 tgctgttcagcttggcccttgaccactccatctacttttgctgcatgtttctcccattca 775

                                              
Query: 576 gagtgattcaaggctaaatttagtggtttccttga 610
           |||||||||||||||||||||||||||||||||||
Sbjct: 776 gagtgattcaaggctaaatttagtggtttccttga 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)