Query= MSMg01no497_f09.b1 MSMg01no497_f09.b1 CHROMAT_FILE:
MSMg01no497_f09.b1 PHD_FILE: MSMg01no497_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:59 2005
(648 letters)
>mm_chr7_88587707_88588754
Length = 1048
Score = 1185 bits (613), Expect = 0.0
Identities = 635/645 (98%), Gaps = 6/645 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggattctctttctcctggttcgtcctcctttggttatttttatgtatctatag 64
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggaaccactttctcctggttcgtcctcctttggttatttttatgtatctatag 264
Query: 65 ggtatatatatctaccaatcacccagtcttaattctattgtcagtctgagaaagagacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtatatatatctaccaatcacccagtcttaattctattgtcagtctgagaaagagacag 324
Query: 125 aacagtatccagaaaatagtaaggaaatcatttaaagattttcagttttagattgggtta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacagtatccagaaaatagtaaggaaatcatttaaagattttcagttttagattgggtta 384
Query: 185 gtgcatgtgtttatgtgatagatatatatatat-atatatcacacatacacacacatgta 243
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct: 385 gtgcatgtgtttatgtgattgatatatatatatca-----cacacatacacacacatgta 439
Query: 244 catgaatgctgctgctcatggaggccagaagttttcagatccaccagagctggagttatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catgaatgctgctgctcatggaggccagaagttttcagatccaccagagctggagttatg 499
Query: 304 tgcagttgtgagctgggaactgaacttggttcctctacaagagcagagtaactgctgagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcagttgtgagctgggaactgaacttggttcctctacaagagcagagtaactgctgagc 559
Query: 364 catttccctaggcccagaatggaatatttaataccaaaattgatcaaaaatagttgacag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catttccctaggcccagaatggaatatttaataccaaaattgatcaaaaatagttgacag 619
Query: 424 cacatgatcactgtaactatagcttttgtccacaaataactagtcactattcactgcaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cacatgatcactgtaactatagcttttgtccacaaataactagtcactattcactgcaag 679
Query: 484 tatcactaactctacaatttgataaactgtaaggctgttcacagcctatatctatacttc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatcactaactctacaatttgataaactgtaaggctgttcacagcctatatctatacttc 739
Query: 544 tgcagcagtacccaacattaagatctgctatattttcaagctctcaatatagataccata 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcagcagtacccaacattaagatctgctatattttcaagctctcaatatagataccata 799
Query: 604 tgatagctagatccatattatacttctgtcataggtactttgggc 648
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgatagctagatccatattatacttctgtcataggtactttgggc 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_f09.g1 MSMg01no497_f09.g1 CHROMAT_FILE:
MSMg01no497_f09.g1 PHD_FILE: MSMg01no497_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:59 2005
(562 letters)
>mm_chr7_88750958_88751919
Length = 962
Score = 996 bits (515), Expect = 0.0
Identities = 551/563 (97%), Gaps = 2/563 (0%)
Strand = Plus / Minus
Query: 1 tttgctgatgactttaatgaaggtccactcacatttttaaagaggggaggaggcctttga 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 762 tttgctgatgactttaatgaaggtccactcacgtttttaaagaggggaggaggcctttga 703
Query: 61 tggcagagacataaac-gagaacagaacagacgagccacagttggggaggtgcagactca 119
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tggcagagacataaacag-gaacagaacagacgagccacagttggggaggtgcagactca 644
Query: 120 tccagtgcctagagcagtttgcatgcatgactggctgtccacagagggagctagctgctc 179
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 643 tccagtgcctagagcagtttgcatgcatgcctggctgtccacagagggaactagctgctc 584
Query: 180 tccagcctgcatgttccacagacacagccttgagcagcatgatggcaggtgcaggtactg 239
|||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 583 tccagcctgcttgctccacagacatagccttaagcagcatgatggcaggtgcaggtactg 524
Query: 240 catttgatatgagtgtgagagagctcacatgcagcccaaaagcatcacaagcaagcccgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 catttgatatgagtgtgagagagctcacatgcagcccaaaagcatcacaagcaagcccgt 464
Query: 300 ttggcaggggctctttctatagccaagacccctgcagacaccagtggcgactgtgaatga 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttgacaggggctctttctatagccaagacccctgcagacaccagtggcgactgtgaatga 404
Query: 360 gacccaacttagacctcacgtgcagccaggtgcgtgcttggaaactgggcggtctgggag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gacccaacttagacctcacgtgcagccaggtgcgtgcttggaaactgggcggtctgggag 344
Query: 420 gagctcaagcgatgctgcccttcagggagcaccagccactgctctttactggtaactgaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gagctcaagcgatgctgcccttcagggagcaccagccactgctctttactggtaactgaa 284
Query: 480 gtgggtcactagaagttacactcgttcaattcttgggaacatcactggattttgaagcac 539
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 283 gtgggtcactagaagttacactcactcaattcttgggaacatcactggattttgaagcac 224
Query: 540 ttgcaacataaggcagaagcttt 562
|||||||||||||||||||||||
Sbjct: 223 ttgcaacataaggcagaagcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
