BAC Information

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BAC

Clone NameMSMg01-497N13
Chromosome7 (Build37)
Map Location 88,187,329 - 88,187,706
singlet/doubletsinglet
Overlap geneZfp592
Upstream geneZfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a
Downstream geneAlpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497N13.T7 (MSMg01no497_n13.b1)MSMg01-497N13.TJ (MSMg01no497_n13.g1)
ACCAG574315AG574316
length1,259769
length of high quality
(start - end)
---380 (327 - 706)
definitionCHROMAT_FILE: MSMg01no497_n13.b1 PHD_FILE: MSMg01no497_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:40 2005CHROMAT_FILE: MSMg01no497_n13.g1 PHD_FILE: MSMg01no497_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGTCCTCTTATAATTGGGTGGTGCGCTTAAGAGCGAAGCACCAGAGAGT
TGCTCTCACAAGAGACACGCGGCGGGGAGAGATCGTATGCGGTGTTTTCC
TCTAAATAAATACGAACGCTAGAGGAAGACCNACAGCCAATAGAGCTCAT
CACTCGGCTGCTACGAGACGCCAGTGCTGTACTAGGCNATATATTCAATC
GTGTATGTCTATTCCTCGACGCGGTCCTCACTGTGCCTGGCTTACAGTCA
ACTGCTCGAGTATATATAATATTATTACAGACCTGAAGCATGACAATATC
GAGAGTCCCATNTAATGACCCCACAGTGACTCTATTATCACAGATTGCCC
GCAGACACGCCTATTTGATTGTGCAGTTATGCGTGTGAGATCCCGACCTC
CGTACGAGAGTATAGNATATATAGCTCTCAATGTTAAGCCCCGCGGTCAG
TACCGTAGTGTNTCGCCCACCGCATGTGCCCCAGTTGGCCATCTTGTTTG
TGCCATCTCGCATCCATCATACAGCAGTCGGTCAGATGTGTACGAGACCC
GCAACGCGCGCGTGGCCAATACGCAAACACCATTCATCTTTTTCTNTTTC
CCATTATTTCTGAGGACATATTCGCGTGTTCACGCGCAAGNCACAACCAC
GCAGACGCGACGTAACCTTATACTTTTATTCTACCGCCGGCGNTTATATA
ATAAACACCGCGGCGCGTGTTATATCCTGCCCCTCCATCCCTATTGCTAA
GACCCATCCGGACCGACACTCGAATAACACTCTGGTGTCATTCAACGCCG
ACCAACTTCCGACTCATGCTTCGCGTTAGCAAGCATCATATTAACCGACA
CACTGCGCTTGCGCACACTGTTNTAGTGAGAGTAGTATCGTACGGCTAAC
GCGCACAGCGACACGACGAGACAATAGACTCACTTGATCACACGCACGTG
ATCCGCCANCTACTATGAACGAGCGCCCACTGATGCGACGNAGTTGCGGC
AGCCGACCGACTCAGGTACTTCACATGACCCCACATCGATATGTAACCGG
CGGTCCACGAATAATGCACTGTTCTCGCANATTNTAGTAGAGATAGTGTC
CAGACGAGTAAGCCTACTAGCCGCTACTAGCNACTCGCCACGTCGACGCA
CNTGAACACGCCATACGATCACGTCCTCACTATATGCCGCACACAGTGTC
ACTCTAGACGAACAGAAGTCTATCTCAAGTGCGCACGCGCATGTGCGCTA
GTCCTACGN
NGGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCAAAAAAATTCCTTCTCTTCGTTCCTCACCAAG
AATCTCTTGGGTTGAAAACCCTTTGATGGAAAGATGTCCAGAGAATATCA
ATAGACCTTAAGGCTAATGCTGCCAGGCCAGTCCTTGGAGGTGGCTCTTG
ACCAGTACTGACACCCCACTACACCACCCTGCTCCTTTAGAACTCTCCAG
ATATCCAAGATGTATAGGACTCCTGCTTTCCCAAGCACAAGCCCCAGAAC
CTAGAGCTCCCGTGGGCATTTTTTATTGCTGTTTTGCTTCAGATGGGGCA
GTCAGGGCTGTCTGGGAAGAGTCTCAGGTGGAGCAGGGAAGGGCTAGCTC
ACCAGAAGAGGAATACAACACCCTACCTGCATGGTAAGATTTTTTTTATT
ATTGAAATATAGTCTGAGCAACAAGAGTGTAGCCGAGAGGAGGAGCTGGC
CTTCCTGAGGCAGCAGCAGCTCTAATGGCACAGGAACAAAAATACAAATA
CCCCAATATCTGTGTGCCACACACCCCACCTGTCAGGGATTGCAGGACAG
CAGCAGAAGGAAAACCCACCACAGCCCCAAAGAGGATCTGGCTCTTGGCA
CCTGCCTGCCTTGGCCATACTTCGTGCTTCTCTCAGGTCGAAACAGGAGT
GTACTGCCATTTTTCCCACCCACAGAGACATGATCAGAGTGACAGGTGAA
GTCCTCACGATGTTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_n13.g1 MSMg01no497_n13.g1 CHROMAT_FILE:
MSMg01no497_n13.g1 PHD_FILE: MSMg01no497_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:40 2005
         (380 letters)



>mm_chr7_88187129_88187906
          Length = 778

 Score =  708 bits (366), Expect = 0.0
 Identities = 376/380 (98%), Gaps = 2/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgttttgcttcagatggggcagtcagggctgtctgggaagagtctcaggtggagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgctgttttgcttcagatggggcagtcagggctgtctgggaagagtctcaggtggagcag 519

                                                                       
Query: 61  ggaagggctagctcaccagaagaggaatacaacaccctacctgcatggtaagattttttt 120
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 518 ggaagggctagctcaccagaagaggaatacaagagcctacctgcatggtaagattttttt 459

                                                                       
Query: 121 tattattgaaatatagtctgagcaacaagagtgtagccgagaggaggagctggccttcct 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 --ttattgaaatatagtctgagcaacaagagtgtagccgagaggaggagctggccttcct 401

                                                                       
Query: 181 gaggcagcagcagctctaatggcacaggaacaaaaatacaaataccccaatatctgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaggcagcagcagctctaatggcacaggaacaaaaatacaaataccccaatatctgtgtg 341

                                                                       
Query: 241 ccacacaccccacctgtcagggattgcaggacagcagcagaaggaaaacccaccacagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ccacacaccccacctgtcagggattgcaggacagcagcagaaggaaaacccaccacagcc 281

                                                                       
Query: 301 ccaaagaggatctggctcttggcacctgcctgccttggccatacttcgtgcttctctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccaaagaggatctggctcttggcacctgcctgccttggccatacttcgtgcttctctcag 221

                               
Query: 361 gtcgaaacaggagtgtactg 380
           ||||||||||||||||||||
Sbjct: 220 gtcgaaacaggagtgtactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 778
Length adjustment: 9
Effective length of query: 371
Effective length of database: 769
Effective search space:   285299
Effective search space used:   285299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)