BAC Information

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BAC

Clone NameMSMg01-498D07
Chromosome7 (Build37)
Map Location 143,229,322 - 143,229,913
singlet/doubletsinglet
Overlap genenone
Upstream geneDock1, LOC100043254, Foxi2, Clrn3, Ptpre, Mki67, LOC668764
Downstream geneLOC546009, EG621677, EG668771, Mgmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498D07.T7 (MSMg01no498_d07.b1)MSMg01-498D07.TJ (MSMg01no498_d07.g1)
ACCAG574587AG574588
length751749
length of high quality
(start - end)
600 (53 - 652)570 (57 - 626)
definitionCHROMAT_FILE: MSMg01no498_d07.b1 PHD_FILE: MSMg01no498_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:08 2005CHROMAT_FILE: MSMg01no498_d07.g1 PHD_FILE: MSMg01no498_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCAATTCTATAAATTGCGGCTCTAAACGACTCCTATATTCANAAATGGG
NGGAATTCTCCTGTCTCTCCTTCTCGGGTACTGGGATTACTCACTGGGAA
TTGCCAGTTGGCTATACTGGCTGGAATTCTCCTGTCTCGGCTTCCCCAGT
GTTAGAATTACTGGCTCCTGTTTCCACACCCTGCTTTTTGTGCTTCCTTT
TATTGAAAATAGATTTTCCCCCTCACACAATCCTGATTATGAGCCTTCTC
CCTTTACTCCTCCCAGTTACTCCTCACCTCTGATCCACCCTCTTTTAGAA
CTCATTAGAAAAGAGTTCTATGTGATAATAATAGAATAAAATATAATAAG
ATAAAACAAACTAACACATTACAACTGGACAGAACAAAAGGGAAGAAAAA
AACCCAAGAGTAGGCACAAGAAACAGAGACCCCACTCATTTTCATATTCA
GGAATACCATCAAAACACTAAACTAGAAGCCAAAATATTTACACAAAGGA
ACTGTAGGGTAAACAGAATATATATATATATGAATATATGAAACAGAATA
ATAAGATAAAATTCTAAAATATAAAAGAAGGAGCCATGACATCCCATCAG
AAAGGAAGCTCCAAAAATACCACTGAGTTCATTTTCTGTTGGCCATCACT
GCCAGGCTTACAGCCTGCCCTTAAGAATAGTAGAGGATACTAAATTTTTA
TTTGCAAGTGGCTATCAAGTGGACAATGCTTCTTGGTTAGGGATGGTGAC
A
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTGCCAGGCTCAGTGGATGAAGTATGAGAAGACACTAGAGAAAG
GTCCCAGCTCTGATGGAAGGAAACTCCTAAGTGTGGTGAGTCAACCAGGA
AAACCTTGGGTCCCTTCTTAAGGGTAGCCCCTTGGGCTCTGCTGATGCCA
GTCACCCACAAGTTTTGGATTCAAACTCATGAATCCTTGTAGGTCTTATT
ACTTGTGCTGACACATCCAGTGTCCCCAGTGAGGCACTAGGCCTAGGTTG
GTAAGGAGGTCTTTCATTAGGGATGGGAGCCTCCTTGCTCTGCCTAGGGA
CGTGTGTCTTGCATGTTTAATAATGTTCAAGTCATGACACAACCCTGAAA
GAGGAAATGGCATTTCTTTATTAAAACTGCTTTATTAAGTCTGGTTTTTT
TTTCAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCT
TCTACTGCAGAGAGCCCAGCCCTAGTTTTACAGACTCTTCTTTTGAAAGG
TGTCTCTGCTGCTTTGCATCATTGGGATGAAACAAATTGTGTTACGCAGA
CTGGAGCTAAATTGTCCTACCTCTCATTGGCCGTTTATGTGACTCCGTGG
CTTTCGAATGGTGGGATGGGGGGAGGATGCCAAATGTCCTGCCTTTTTTA
ACCATGATCATATAAAGCTTTCTGTTAATGTCACCCCTTAGAATCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_d07.g1 MSMg01no498_d07.g1 CHROMAT_FILE:
MSMg01no498_d07.g1 PHD_FILE: MSMg01no498_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:08 2005
         (570 letters)



>mm_chr7_143229144_143230113
          Length = 970

 Score = 1025 bits (530), Expect = 0.0
 Identities = 566/592 (95%), Gaps = 22/592 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccaggctcagtggatgaagtatgagaagacactagagaaaggtcccagctctgatgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 179 ctgccaggctcagtggatgaagtatgagaagacactagagaaaggtcccatctctgatgg 238

                                                                       
Query: 61  aaggaaactcctaagtgtggtgagtcaaccaggaaaaccttgggtcccttcttaagggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 239 aaggaaactcctaagtgtggtgagtcaaccaggaaaaccttgggtcccttcttaaggata 298

                                                                       
Query: 121 gccccttgggctctgctgatgccagtcacccacaagttttggattcaaactcatgaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gccccttgggctctgctgatgccagtcacccacaagttttggattcaaactcatgaatcc 358

                                                                       
Query: 181 ttgtaggtcttattacttgtgctgacacatccagtgtccccagtgaggcactaggcctag 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 359 ttgtaggtcttattacttgtgctgacacatccagcgtccccagtgaggcactaggcctag 418

                                                                       
Query: 241 gttggtaaggaggtctttcattagggatgggagcctccttgctctgcctagggacgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gttggtaaggaggtctttcattagggatgggagcctccttgctctgcctagggacgtgtg 478

                                                                       
Query: 301 tcttgcatgtttaataatgttcaagtcatgacacaaccctgaaagaggaaatggcatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcttgcatgtttaataatgttcaagtcatgacacaaccctgaaagaggaaatggcatttc 538

                                                                       
Query: 361 tttattaaaactgctttattaagtctggtttttttttcagcagagagagagagagagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tttattaaaactgctttattaagtctggtttttttttcagcagagagagagagagagaga 598

                                                                       
Query: 421 gagagagagagagagagaga----------------------tccttctactgcagagag 458
           ||||||||||||||||||||                      ||||||||||||||||||
Sbjct: 599 gagagagagagagagagagagagagagagagagagagagagatccttctactgcagagag 658

                                                                       
Query: 459 cccagccctagttttacagactcttcttttgaaaggtgtctctgctgctttgcatcattg 518
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 659 cccagccctagttttacagactcttcttttgaaaggtgcctctgctgctttgcatcattg 718

                                                               
Query: 519 ggatgaaacaaattgtgttacgcagactggagctaaattgtcctacctctca 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ggatgaaacaaattgtgttacgcagactggagctaaattgtcctacctctca 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)