Query= MSMg01no499_k15.b1 MSMg01no499_k15.b1 CHROMAT_FILE:
MSMg01no499_k15.b1 PHD_FILE: MSMg01no499_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:06 2005
(530 letters)
>mm_chr7_148068975_148069904
Length = 930
Score = 957 bits (495), Expect = 0.0
Identities = 526/548 (95%), Gaps = 18/548 (3%)
Strand = Plus / Plus
Query: 1 tgacgctgtctcaaaaagtgttctccagtgttacctaagaaaactgagtcttgaaaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgacgctgtctcaaaaagtgttctccagtgttacctaagaaaactgagtcttgaaaggat 242
Query: 61 aagtgactagggggtgcaagcaaagtcagtcgagaaataggcttgaattggctggcgctt 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 243 aagtgactagggggtgcaagcaaagtcagtccagaaataggcttgaattggctggcgctt 302
Query: 121 gctttaactcctggctgtgcagtgggacctgggaaatacttggtgtttgatggg------ 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gctttaactcctggctgtgcagtgggacctgggaaatacttggtgtttgatgggaccgtc 362
Query: 175 ------------atccttttcttcacattaggatgtgggactgagggctttttgttttgt 222
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaggctgaaggcatccttttcttcacattaggatgtgggactgagggctttttgttttgt 422
Query: 223 aggttgtggcatcagctgacacttgatgngcttgattttgtgcaggacccatgctttgcc 282
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 423 aggttgtggcatcagctgacacttgaggtgcttgattttgtgcaggacccatgctttgcc 482
Query: 283 caaggagatggtctcattaaggtaatgacttaccagacagctcagacaatgttgaatata 342
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 483 caaggagatggtctcattaaggtaatgacttaccagacagctcagacgatgttgaatata 542
Query: 343 attacaaactattattattcatttttatttacttttaacgtgtgtgcgcccaaggatgcc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 attacaaactattattattcatttttatttacttttaacgtgtgtgcgcccaaggatgcc 602
Query: 403 agaagagatctcctggaactggagttgcaggcagttgtaagccaactggtgtaggtgcta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agaagagatctcctggaactggagttgcaggcagttgtaagccaactggtgtaggtgcta 662
Query: 463 ggaacccagtttgagtcttcaaaatgctcttaaactatcactgagccacgtctccagaca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggaacccagtttgagtcttcaaaatgctcttaaactatcactgagccacgtctccagaca 722
Query: 523 atttttgc 530
||||||||
Sbjct: 723 atttttgc 730
Score = 101 bits (52), Expect = 2e-25
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 175 atccttttcttcacattaggatgtgggactgagggctttttgttttgtaggttgtggcat 234
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 92 atccgtttcttcacattaggatgtggggctgagggctttttgttttgtaggttgtggcat 151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_k15.g1 MSMg01no499_k15.g1 CHROMAT_FILE:
MSMg01no499_k15.g1 PHD_FILE: MSMg01no499_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:06 2005
(588 letters)
>mm_chr7_148237349_148238335
Length = 987
Score = 1067 bits (552), Expect = 0.0
Identities = 579/588 (98%), Gaps = 1/588 (0%)
Strand = Plus / Minus
Query: 1 acctggaaggctagagtggctgaccattgatccccaggatctgcctgctacgattgtaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 acctggaaggctagagtggctgaccattgatccccaggatctgcctgctacgattgtaag 835
Query: 61 tgtggcatgcccagcttatttatttatttatttacttacttatttataaccagattgtct 120
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 834 cgtggcacgcccagcttatttatttatttacttacttacttatttataaccagattgtct 775
Query: 121 ttcgttgaaatattttctctagttgcttgttagctagctgggcatccatcccagaaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ttcgttgaaatattttctctagttgcttgttagctagctgggcatccatcccagaaggct 715
Query: 181 actattgatgtcacagggtgcccatccacatggtagcctacagaccgcagtactcaggat 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 714 actattgatgtcacagggtgcccatccacatggtagcctacagactgcagtactcaggat 655
Query: 241 ctccttaatactttcagaaagttctctaaggaccagtgttgcatgtgctggacaatcaaa 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 654 ctccttaatactttcagaaagttctctaa-gaccagtgttgcatgtgctggacaatcaaa 596
Query: 301 agtgacatttccactgtgtgtaatgttcttctgcttctttctgtctcttggtggctcctt 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agtgacacttccactgtgtgtaatgttcttctgcttctttctgtctcttggtggctcctt 536
Query: 361 gaagactctgatgctcaggccaagacagaggcatagggcaccacctccatgctggcctgt 420
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 535 gaagactctgatgctcaggccaagacagaggcagagggcatcacctccatgctggcctgt 476
Query: 421 ccgtctggatggtcagtttcactgtcattttcagactgttccagtcactggttaccttgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccgtctggatggtcagtttcactgtcattttcagactgttccagtcactggttaccttgg 416
Query: 481 cagcgtcattaccaactgtttttggagacagacccaagggactgatcttcgggaccaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cagcgtcattaccaactgtttttggagacagacccaagggactgatcttcgggaccaggc 356
Query: 541 atatgtgttgccaacctcacctcaagtacacaactttgatcccattgt 588
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atatgtgtcgccaacctcacctcaagtacacaactttgatcccattgt 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
