BAC Information

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BAC

Clone NameMSMg01-499M01
Chromosome7 (Build37)
Map Location 120,738,767 - 120,739,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2
Downstream geneEG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499M01.T7 (MSMg01no499_m01.b1)MSMg01-499M01.TJ (MSMg01no499_m01.g1)
ACCAG575760AG575761
length741761
length of high quality
(start - end)
577 (72 - 648)515 (71 - 585)
definitionCHROMAT_FILE: MSMg01no499_m01.b1 PHD_FILE: MSMg01no499_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:13 2005CHROMAT_FILE: MSMg01no499_m01.g1 PHD_FILE: MSMg01no499_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCATATTTGGGCGCTAAACGATACTATAGTCATGATGGGCGGAATCTG
GGTTGGTTCTTAAGAGAGGCCATATTCCAAGAATACGTACCTTATTCTGC
CCTTAGCACAACCAAGCTTGTTCCTTCTGGGTCCTTTCTCCTGACATCAT
GACTGCCTGCAGTTAGTCTTGACCACATCCTCTCAGATGTGGAGAATCAG
GTATCCATGTCTGCACTGTGAAAACTTCTGGGCTCTCTAACTTGAGATGA
AGCCACTAACCTTCCTCAAGAAACCACAGGGTGTTCAGATCTATCTCAAA
GAAATTCTTCTCGATTCTCTCCTCAGCCCCACCTCCTCATACAAATGGCT
GAATGGGGGCTGAGGCTCCCAGTCTGACTGCAGACTTCTAGTCAGTGAGG
CCAGCCTAGATGCAAGGCCACCCTCTTTCCTTTGGAGTTGCACCATCTGA
CACAGCAGCCACATGCCACATATGGCCAATGAAAACTTTGAAGAGTTGCT
GTCCTAACTGCAATAGCCCTGTGAGTATAACCATTACCATCATTTATAAA
CTTAGTAAAAAATAAATGAATGTAAAACATCTCATTATTATCTTCATCAT
GAATAGGTGCGGGACTCTGTGTAACATGTTGGGTTAACAATAATACAGTT
CATTACAATTGACCCCATTTCTTTCCTTTAAAAAAAAATATGGCTACCAG
AAAAAGTACACCACATACACAGCTTGGATTAGATCTCTACG
GATACAGTXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAAAGGTGAACTA
TAGAAGGNACTGCTGAAATATGGTTAGTTCCGTGGGACACGCTGCAGCTG
GGGGCCATACCCATCTTAGTGGTCTGAGGCTATGGCAATGTCCAAGCCTG
TGTTGTCACCTAGGGCAATGTCTGGGTCCATGGTCCTTCTAGCTGAGGTC
TATGTTGATGTCCATGTTCTGTGCTGCAGCCTTAGGCTATGTTGATGAGT
GCAGGCTATGCTGCTGCTGGGTGCCATCTTGATGTGAGTAGCCTGGATTG
CCACTTGCCATGAAGAATATACTGTGCCATCAGCCATGGTCCTACTGCTG
CAGGGGTCGGTGTTCAGGGTCTGTGTTGTCACCAGAAACCATGTGGAGAA
CCATGTACTCCCACTGACTGTAAAGGGAAAAGCAGCTACTTTGGCAGTGA
TGTTGATGACTGCAGATACACAGTTAAGAAAGAGGGACATCTTTGACAAC
CCCTATCCCTACCCCCAAAAGTAACAGCTTCCTAAATAGGAAGCCGTCAA
AGCAAACTTAAAAAGTGTGATAAGGATGCTGAAGTGCAGCTCTCCACAAC
TGATGGCAGGGGCAGGGAAGGGGGCAAGGTGATTCAGTTCTATTTAAGGG
ACAGGCCATTGAGAGCCTGACCATTGCGGTGGTTTGAATATGCTTGGCCT
ATGGGAAGTGGCACTGTTAGGAGGTTTGTGCTAACTGGATTACGTGTGGC
CTTGTTGGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_m01.b1 MSMg01no499_m01.b1 CHROMAT_FILE:
MSMg01no499_m01.b1 PHD_FILE: MSMg01no499_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:13 2005
         (577 letters)



>mm_chr7_120738765_120739747
          Length = 983

 Score = 1002 bits (518), Expect = 0.0
 Identities = 559/574 (97%), Gaps = 11/574 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattccaagaatacgtaccttattctgcccttagcacaaccaagcttgttccttctggg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atattccaagaatacgtcccttattctgcccttagcacaaccaagcttgttccttctggg 514

                                                                       
Query: 61  -tcctttctcctgacatcatgactgcctgcagttagtcttgaccacatcctctcagatgt 119
            ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 513 ttcctttctcctgacatcatgattgcctgcagttaatcttgaccacatcctctcagatgt 454

                                                                       
Query: 120 ggagaa-tcaggtatccatgtctgcactgtgaaaacttctgg-gctctctaacttgagat 177
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 453 ggagaagtcaggtatccatgtctgcactgtgaaaacttctggtgctctctaacttgagat 394

                                                                       
Query: 178 gaa-gccactaaccttcctcaagaaaccacagggtgttcagatctatctcaaagaaattc 236
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaaggccactaaccttcctcaagaaaccacagggtgttcagatctatctcaaagaaattc 334

                                                                       
Query: 237 ttctc-gattctctcctc-agccccacctcctcatacaaatggctgaatgggggctgagg 294
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttctcagattctctcctcaagccccacctcctcatacaaatggctgaatgggggctgagg 274

                                                                       
Query: 295 ctcccagtctgactgcagacttctagtcagtgaggccagcctagatgcaaggccaccctc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctcccagtctgactgcagacttctagtcagtgaggccagcctagatgcaaggccaccctc 214

                                                                       
Query: 355 tttcctttggagttgcaccatctgacacagcagccacatgccacatatggccaatgaaaa 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tttcctttggagttgcaccatctgacacagcagccacatgccacatatggccaatgaaaa 154

                                                                       
Query: 415 ctttgaagagttgctgtcctaactgcaatagccctgtgagtataaccattaccatcattt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ctttgaagagttgctgtcctaactgcaatagccctgtgagtataaccattaccatcattt 94

                                                                       
Query: 475 ataaacttagtaaaaaataaatgaatgtaaaacatctcattattatcttcatcatgaata 534
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ataaacttagt-aaaaataaacgaatgtaaaacatctcattattatcttcatcatgaata 35

                                             
Query: 535 ggtgc--gggactctgtgtaacatgttgggttaa 566
           |  ||  |||||||||||||||||||||||||||
Sbjct: 34  g--gcatgggactctgtgtaacatgttgggttaa 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 983
Length adjustment: 10
Effective length of query: 567
Effective length of database: 973
Effective search space:   551691
Effective search space used:   551691
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)