Query= MSMg01no499_m16.b1 MSMg01no499_m16.b1 CHROMAT_FILE:
MSMg01no499_m16.b1 PHD_FILE: MSMg01no499_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:16 2005
(662 letters)
>mm_chr7_102005698_102006760
Length = 1063
Score = 1189 bits (615), Expect = 0.0
Identities = 651/667 (97%), Gaps = 9/667 (1%)
Strand = Plus / Plus
Query: 1 tcacaagaccaagggcctctcctcccattgatgtctgactaggccatcctctgctacaaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tcacaagaccaagggcctctcctcccattgatgtctgactaggccgtcctctgctacaaa 260
Query: 61 tacagctagagacacgagctctggagagtactggttagtaaatattgttgttcctcctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagctagagacacgagctctggagagtactggttagtaaatattgttgttcctcctat 320
Query: 121 agagttgcagaccccttctgctccctgggtactttctctagctcattcattggggaccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagttgcagaccccttctgctccctgggtactttctctagctcattcattggggaccct 380
Query: 181 gtgttccatccaatagatgactgtgagcatccacttctgtatttgccaggcactggaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttccatccaatagatgactgtgagcatccacttctgtatttgccaggcactggaata 440
Query: 241 gcctcactttta----acagatataacagggtcctgtcagcaaaaactactgttcatatc 296
||||||| | ||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct: 441 gcctcac----aggaaacagatatatcagggtcctgtcagcaaaatctattgttcatatc 496
Query: 297 aactgataagaggttgaatggctagctttattgataaggccaaaccaatcataaatttcc 356
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aactgataacaggttgaatggctagctttattgataaggccaaaccaatcataaatttcc 556
Query: 357 acaagagaccttagcaaatggtgtagcatgagctgaagagataggtccatggatgtaggc 416
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 557 acaagagaccttagcaaatggtgtagcatgagctgaagagatagctccatggatgtacgc 616
Query: 417 tgtaattatcatgctcagaaatctgtgcagaatccctagtaccccagatgaaggaaaaaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtaattatcatgctcagaaatctgtgcagaatccctagtaccccagatgaaggaaaaaa 676
Query: 477 -cagtgtcctgcaagctgtcctctaactgccacacacagtgtggcacatatacaaaccct 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acagtgtcctgcaagctgtcctctaactgccacacacagtgtggcacatatacaaaccct 736
Query: 536 aaataaataaataatacatgaaaatatggttttatagtaatactttcatcaataaaaatt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaataaataaataatacatgaaaatatggttttatagtaatactttcatcaataaaaatt 796
Query: 596 ttattttgtgagggaagttaacattggttaaacactgaattttagtaaggtgatttcaca 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttattttgtgagggaagttaacattggttaaacactgaattttagtaaggtgatttcaca 856
Query: 656 tacatag 662
|||||||
Sbjct: 857 tacatag 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space: 686556
Effective search space used: 686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_m16.g1 MSMg01no499_m16.g1 CHROMAT_FILE:
MSMg01no499_m16.g1 PHD_FILE: MSMg01no499_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:16 2005
(655 letters)
>mm_chr7_102197001_102198055
Length = 1055
Score = 890 bits (460), Expect = 0.0
Identities = 478/484 (98%)
Strand = Plus / Minus
Query: 1 tgaagatccttatattcttaaacactcatcatttctttataagggaaatatttaaagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgaagatccttatattcttaaacactcatcatttctttataagggaaatatttaaagtct 425
Query: 61 acctatttgagctgcatggtagaggatttttatgtatacataacctgtcttgtaatttca 120
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 424 acctatttgagctgcatggtagaggatttttatgtatacataacttgttttgtaatttca 365
Query: 121 ggtataaattacttatacctatctaactgcagtgtgggatatattgacaattttttcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggtataaattacttatacctatctaactgcagtgtgggatatattgacaattttttcctg 305
Query: 181 actgtcttctttggggtttcttgactggcacaattattatagttagtaaacagactactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 actgtcttctttggggtttcttgactggcacaattattatagttagtaaacagactactc 245
Query: 241 ctatcattttttcaaatgtatacataaaagaaaaaaaaacatgactgcacctaagactca 300
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctatcagtaattcaaatgtatacataaaagaaaaaaaaacatgactgcacctaagactca 185
Query: 301 gagaacactgtgaaggtttggcagaaagattataagagctgtggcatcagggagtttgct 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 184 gagaacactgtgaaggtttggcagaaagattgtaagagctgtggcatcagggagtttgct 125
Query: 361 gtgagattaggtctcctaataacaacagaagcaataccatacaatcacaccaacatgaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gtgagattaggtctcctaataacaacagaagcaataccatacaatcacaccaacatgaat 65
Query: 421 gccttaatgtgacaggaacaagggtgaaccaaggaacatggtcgactggatggggcaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gccttaatgtgacaggaacaagggtgaaccaaggaacatggtcgactggatggggcaaag 5
Query: 481 ccca 484
||||
Sbjct: 4 ccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
