Query= MSMg01no500_d21.b1 MSMg01no500_d21.b1 CHROMAT_FILE:
MSMg01no500_d21.b1 PHD_FILE: MSMg01no500_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:51 2005
(644 letters)
>mm_chr7_78375754_78376797
Length = 1044
Score = 1172 bits (606), Expect = 0.0
Identities = 637/659 (96%), Gaps = 18/659 (2%)
Strand = Plus / Plus
Query: 4 ggaattctccctgattagcggaccaccaatccagtgtgcactgtgtggggttggcccagt 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggaattctccctgataagcggaccaccaatccagtgtgcactgtgtggggttggcccagt 245
Query: 64 cgagtgggccccactgggccccccagggaagaaagccaggaattcacaagggttgattat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cgagtgggccccactgggccccccagggaagaaagccaggaattcacaagggttgattat 305
Query: 124 tgccagggttttagttgttttttctcttcctctctcctgtttctaagctatgttcttcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgccagggttttagttgttttttctcttcctctctcctgtttctaagctatgttcttcct 365
Query: 184 tgtaaatcaatgcctagacttgggaggctaagcatccaccctgatggaacccagtctctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgtaaatcaatgcctagacttgggaggctaagcatccaccctgatggaacccagtctctg 425
Query: 244 taagggcgcagcagtggagatact------------------aagcccctttaaagagtg 285
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 426 taagggcgcagcagtggagatactttacccagggatttcactaagcccctttaaagagtg 485
Query: 286 accttgggaggcaaaagggaagggtcagcctgtgtattgttactggaggcttgcaatggt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 accttgggaggcaaaagggaagggtcagcctgtgtattgttactggaggcttgcaatggt 545
Query: 346 ttaaatgaacttccatgggtgacacatgtgaacagggagcctaaaactatttttactcat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttaaatgaacttccatgggtgacacatgtgaacagggagcctaaaactatttttactcat 605
Query: 406 taaagtcaacacttcacatctagcttttcatcttatgtcaacaacacatctgtccactga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 taaagtcaacacttcacatctagcttttcatcttatgtcaacaacacatctgtccactga 665
Query: 466 gaattctgcctttaaaaagtacagaaaaataaaaccatcaggattttttcctattgtgac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaattctgcctttaaaaagtacagaaaaataaaaccatcaggattttttcctattgtgac 725
Query: 526 ttttctaaatttaaaaatatactacttactgtgtctacatgtgtggggcaggatagacgt 585
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 726 ttttctaaatttaaaaatatactgcttactgtgtctacatgtgtggggcaggatagacga 785
Query: 586 gtgtgtccaaacacaggtgtggaggtcaaaggacacgtttactgangtgactcgatctc 644
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 786 gtgtgtccaaacacaggtgtggaggtcaaaggacacgtttactgaggtgactcgatctc 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_d21.g1 MSMg01no500_d21.g1 CHROMAT_FILE:
MSMg01no500_d21.g1 PHD_FILE: MSMg01no500_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:51 2005
(556 letters)
>mm_chr7_78459911_78460866
Length = 956
Score = 853 bits (441), Expect = 0.0
Identities = 476/507 (93%), Gaps = 30/507 (5%)
Strand = Plus / Minus
Query: 49 acagagatgcacacctgcttctaattcctcattcctgggtttaaaaaatgtgtgccccta 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 acagagatgcacacctgcttctaattcctcattcctgggtttaaaaaatgtgtgccccta 897
Query: 109 ttgtttaaaaaatattttattttattttattttattttattttattttattttattttat 168
|||||||||||| ||||||||||||||||||
Sbjct: 896 ttgtttaaaaaa------------------------------tattttattttattttat 867
Query: 169 tttattttattttattttgctttgtgacagtcactgtgtggtcctcagcgccctggaact 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tttattttattttattttgctttgtgacagtcactgtgtggtcctcagcgccctggaact 807
Query: 229 tgtttcatagattatattggcctcagctctcagagatctgcccatctctactgggaggaa 288
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tgtttcatagattagattggcctcagctctcagagatctgcccatctctactgggaggaa 747
Query: 289 agatatgtggaaccaagtttcttctagatttcttgaacttactgcgttactgttcattga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agatatgtggaaccaagtttcttctagatttcttgaacttactgcgttactgttcattga 687
Query: 349 atgaaaacctcagacgtctgagcaaattcaaatgcacgcctctaacagagggctttcttc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atgaaaacctcagacgtctgagcaaattcaaatgcacgcctctaacagagggctttcttc 627
Query: 409 tgtatgagatgccttctgtttaagtagatggctcacttcctacagaagccgcaaagctgt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgtatgagatgccttctgtttaagtagatggctcacttcctacagaagccgcaaagctgt 567
Query: 469 ttcagaaatggctcccgaggaaccgtttctgcttcccagccctggctaagggccttgtct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttcagaaatggctcccgaggaaccgtttctgcttcccagccctggctaagggccttgtct 507
Query: 529 ctgagcttcttctcattgtttcttgga 555
|||||||||||||||||||||||||||
Sbjct: 506 ctgagcttcttctcattgtttcttgga 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
