BAC Information

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BAC

Clone NameMSMg01-500H22
Chromosome7 (Build37)
Map Location 81,504,981 - 81,576,463
singlet/doubletdoublet
Overlap geneSlco3a1, EG665308
Upstream geneLOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979
Downstream geneEG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500H22.T7 (MSMg01no500_h22.b1)MSMg01-500H22.TJ (MSMg01no500_h22.g1)
ACCAG576321AG576322
length700685
length of high quality
(start - end)		597 (36 - 632)492 (57 - 548)
definitionCHROMAT_FILE: MSMg01no500_h22.b1 PHD_FILE: MSMg01no500_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:08 2005CHROMAT_FILE: MSMg01no500_h22.g1 PHD_FILE: MSMg01no500_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,504,981 - 81,505,573)(81,575,972 - 81,576,463)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAG
CATTTTGTTTGTTTTAGGCTTTATTTTGAATCATGTGTGGCTATATGCAC
GTGAGTGCTGTGGCCTCAGAGTCTGGAAGAGAGGGCATTAAATCCCCTGG
GCTGGAGTTAGGGGTTGTCTGAGCTAACTGATGGGCATCCTGGGAACAAA
CTTGGATCCTCTATAAGAGACCTTCTACATACACACATGCATATTGTTAA
CAACTGAACCATCTCTCCAGCCTATCTACAGAATTTGATAGATTTCTTTA
ACAGGATATTCACAGACACCTCCTCCAGTTTCTCTTACCTTTAGAGGATT
TTGTATCACACCAATCAGAAATACTAAATCCAAGCCTATCATTCGGTAGT
GTTTCTGTCACTAAAAAGGGGAGGAGTGCTTGAGAGATGGCTCAGTCAGC
AATGTACCTCCTATATAAGTATAAGAACCCTCACTTGCCTTCTTAGTACT
CACAAATGAGCCTACCATGGCAGCCAGAGTGGAACCTCAGTACGAGGAAG
GGGGAGACATAAAGATCACTGGAGTGCTTCAGTCACCCAACTTAGTTTTG
GTGGACTGTGAGAGGCAGCCTGGTTTCTGGTTGAGCTAAGTTTAAAACCC
CGTAGCATGCAAGAGACGGTAGGCGTTTTGCCATGCTCCTAGATCCCAGG


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAGTTGGCTCTTCTATAAAGTTACACTGCTGATGCTTGCTCCAC
ATGACTTCTGATGAAGGTGAAGTAGCATTTAAGAAGTACAGACAAGTGGC
ACATAAAACGGGCTTTAAAAGAATGTAGTGAAGTTTTCTTCCATTTTAAA
TTTGTTGACCTATGACCTTTTTTTGAGCTAGTATATTAAGATAACCCAGA
ATCATTTTCAAAGATTTAAGTGAGTACATATGGACACCAAAGTAATGAAT
TAGGTTTAACATTTATGTTCATGTTGGTAGAACATAAGGGATTTTTATCT
GTGAGTATGCATGTATGAAAGAGTATTTATACAGACATACATATGTACAG
TTGCATACATAAAATACATACTCATAGATACAGAACAGGTTGTTTTCTCA
ATGATAATTTTCAATGGTAAGTGTAGTCATTATGTGTAGAGGACAGTAAT
AACCTGCAAAAAAGCTCAGTGGATAAAGCAGCTTACTACACAAGCCTGGT
GATAGATAGCTCAGTGGATAAAGGTGCTTACCACACAAGCCTGGTGATAG
ATAGCTCAGTGGATAAAGGTGCTTACCACACAAGCCTGGTGATAGCTCAG
TGGATAAAGTGCTTTACACCNAGCCTGGTGATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_h22.b1 MSMg01no500_h22.b1 CHROMAT_FILE:
MSMg01no500_h22.b1 PHD_FILE: MSMg01no500_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:08 2005
         (597 letters)



>mm_chr7_81504777_81505773
          Length = 997

 Score = 1100 bits (569), Expect = 0.0
 Identities = 587/593 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacagcattttgtttgttttaggctttattttgaatcatgtgtggctatatgca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagcattttgtttgttttaggctttattttgaatcatgtgtggctatatgca 264

                                                                       
Query: 65  cgtgagtgctgtggcctcagagtctggaagagagggcattaaatcccctgggctggagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgtgagtgctgtggcctcagagtctggaagagagggcattaaatcccctgggctggagtt 324

                                                                       
Query: 125 aggggttgtctgagctaactgatgggcatcctgggaacaaacttggatcctctataagag 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggggttgtctgcgctaactgatgggcatcctgggaacaaacttggatcctctataagag 384

                                                                       
Query: 185 accttctacatacacacatgcatattgttaacaactgaaccatctctccagcctatctac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accttctacatacacacatgcatattgttaacaactgaaccatctctccagcctatctac 444

                                                                       
Query: 245 agaatttgatagatttctttaacaggatattcacagacacctcctccagtttctcttacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaatttgatagatttctttaacaggatattcacagacacctcctccagtttctcttacc 504

                                                                       
Query: 305 tttagaggattttgtatcacaccaatcagaaatactaaatccaagcctatcattcggtag 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 tttagaggattttgtatcacaccaatccgaaatactaaatccaagcctatcattcggtag 564

                                                                       
Query: 365 tgtttctgtcactaaaaaggggaggagtgcttgagagatggctcagtcagcaatgtacct 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 tgtttctgtcactaaaaaggggaggagtgcttgagagacggctcagtcagcaatgtacct 624

                                                                       
Query: 425 cctatataagtataagaaccctcacttgccttcttagtactcacaaatgagcctaccatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctatataagtataagaaccctcacttgccttcttagtactcacaaatgagcctaccatg 684

                                                                       
Query: 485 gcagccagagtggaacctcagtacgaggaagggggagacataaagatcactggagtgctt 544
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 685 gcagccagagtggaacctcagtacgaggaagggggagacataaaggtcactggagtgcat 744

                                                                
Query: 545 cagtcacccaacttagttttggtggactgtgagaggcagcctggtttctggtt 597
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 745 cagtcacccaacttagttttggtggactgtgagaggcagtctggtttctggtt 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no500_h22.g1 MSMg01no500_h22.g1 CHROMAT_FILE:
MSMg01no500_h22.g1 PHD_FILE: MSMg01no500_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:08 2005
         (492 letters)



>mm_chr7_81575772_81576663
          Length = 892

 Score =  920 bits (476), Expect = 0.0
 Identities = 488/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttggctcttctataaagttacactgctgatgcttgctccacatgacttctgatgaag 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 692 cagttggctcttctataacgttacactgctgatgcttgctccacatgacttctaatgaag 633

                                                                       
Query: 61  gtgaagtagcatttaagaagtacagacaagtggcacataaaacgggctttaaaagaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtgaagtagcatttaagaagtacagacaagtggcacataaaacgggctttaaaagaatgt 573

                                                                       
Query: 121 agtgaagttttcttccattttaaatttgttgacctatgacctttttttgagctagtatat 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 572 agtgaagttttcttccattttaaattcgttgacctatgacctttttttgagctagtatat 513

                                                                       
Query: 181 taagataacccagaatcattttcaaagatttaagtgagtacatatggacaccaaagtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 taagataacccagaatcattttcaaagatttaagtgagtacatatggacaccaaagtaat 453

                                                                       
Query: 241 gaattaggtttaacatttatgttcatgttggtagaacataagggatttttatctgtgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaattaggtttaacatttatgttcatgttggtagaacataagggatttttatctgtgagt 393

                                                                       
Query: 301 atgcatgtatgaaagagtatttatacagacatacatatgtacagttgcatacataaaata 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 392 atgcatgtatgaaagagtatttatacagacatacacatgtacagttgcatacataaaata 333

                                                                       
Query: 361 catactcatagatacagaacaggttgttttctcaatgataattttcaatggtaagtgtag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 catactcatagatacagaacaggttgttttctcaatgataattttcaatggtaagtgtag 273

                                                                       
Query: 421 tcattatgtgtagaggacagtaataacctgcaaaaaagctcagtggataaagcagcttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcattatgtgtagaggacagtaataacctgcaaaaaagctcagtggataaagcagcttac 213

                       
Query: 481 tacacaagcctg 492
           ||||||||||||
Sbjct: 212 tacacaagcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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