BAC Information

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BAC

Clone NameMSMg01-500J04
Chromosome7 (Build37)
Map Location 65,098,081 - 65,098,674
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3
Downstream geneEG668807, LOC434189, Atp10a, LOC621446
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500J04.T7 (MSMg01no500_j04.b1)MSMg01-500J04.TJ (MSMg01no500_j04.g1)
ACCAG576381AG576382
length637651
length of high quality
(start - end)
244 (51 - 294)594 (58 - 651)
definitionCHROMAT_FILE: MSMg01no500_j04.b1 PHD_FILE: MSMg01no500_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:14 2005CHROMAT_FILE: MSMg01no500_j04.g1 PHD_FILE: MSMg01no500_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATATTTCGAGAATCCGCGGAATTCTCACCTGAGTCATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATGAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTTAGAAAACTGGATATAGTATTTTTGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCAAAACCTAGGATATCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGGTGGTAGACTAGTAATCTCCTATCCTCAGCTTTCATTTATC
CTAGCCAGATCATTAGAATTTTAAATGATCTCCATCAAGCTTCCCTTTGA
ATATTTATTGACATTTCAACAACTGTTCCTAATTAAGTAGTTTGTTGTAA
GGAACAGGAGCTTTGTTTACTCTGGTCCAGGAGAAGTGGGAAGAGTCAAA
ATAACCACATTCCCACTCAAAAGTTATGAGGAAGACTATGTGAAGAAATC
TGTTCTGTGGTAGGTCACAGAAAGTAAGTATCTATGTAGCCTGGATGTGC
TACTGAATACAACTGAAAAATGGCCTTTGAGACATTTAAAATTCAAGCAT
ATAAATTGTTATGGTGTGATTACACACAGAAACATGAAATCTACTTTGTA
CCATACATGATGATCCACAGAGATGACTTTCTTGAAGCATGTTGTCATGA
ACATGCTTATGGGCCAACTGAAAGCTAAAAATTAGGAGCATAATTTTCCA
AACCATGGCACCATTTTGCTGCAAAAGTACAGTCTTGTCTTCCAGCTGTC
CAAGTTTCAGAATTAGTTAGTATTAGTAAACAGAGGGGGAAATAATATAA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_j04.g1 MSMg01no500_j04.g1 CHROMAT_FILE:
MSMg01no500_j04.g1 PHD_FILE: MSMg01no500_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:14 2005
         (594 letters)



>mm_chr7_65097881_65098874
          Length = 994

 Score = 1118 bits (578), Expect = 0.0
 Identities = 590/594 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtggtagactagtaatctcctatcctcagctttcatttatcctagccagatcattaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtggtagactagtaatctcctatcctcagctttcatttatcctagccagatcattaga 260

                                                                       
Query: 61  attttaaatgatctccatcaagcttccctttgaatatttattgacatttcaacaactgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttaaatgatctccatcaagcttccctttgaatatttattgacatttcaacaactgtt 320

                                                                       
Query: 121 cctaattaagtagtttgttgtaaggaacaggagctttgtttactctggtccaggagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaattaagtagtttgttgtaaggaacaggagctttgtttactctggtccaggagaagt 380

                                                                       
Query: 181 gggaagagtcaaaataaccacattcccactcaaaagttatgaggaagactatgtgaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagagtcaaaataaccacattcccactcaaaagttatgaggaagactatgtgaagaa 440

                                                                       
Query: 241 atctgttctgtggtaggtcacagaaagtaagtatctatgtagcctggatgtgctactgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgttctgtggtaggtcacagaaagtaagtatctatgtagcctggatgtgctactgaa 500

                                                                       
Query: 301 tacaactgaaaaatggcctttgagacatttaaaattcaagcatataaattgttatggtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaactgaaaaatggcctttgagacatttaaaattcaagcatataaattgttatggtgt 560

                                                                       
Query: 361 gattacacacagaaacatgaaatctactttgtaccatacatgatgatccacagagatgac 420
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 gattgcacacagaaacatgaaatctactttgtgccatacatgatgatccacagagatgac 620

                                                                       
Query: 421 tttcttgaagcatgttgtcatgaacatgcttatgggccaactgaaagctaaaaattagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcttgaagcatgttgtcatgaacatgcttatgggccaactgaaagctaaaaattagga 680

                                                                       
Query: 481 gcataattttccaaaccatggcaccattttgctgcaaaagtacagtcttgtcttccagct 540
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcacgattttccaaaccatggcaccattttgctgcaaaagtacagtcttgtcttccagct 740

                                                                 
Query: 541 gtccaagtttcagaattagttagtattagtaaacagagggggaaataatataat 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtccaagtttcagaattagttagtattagtaaacagagggggaaataatataat 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)