BAC Information

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BAC

Clone NameMSMg01-500J21
Chromosome7 (Build37)
Map Location 66,893,007 - 66,893,557
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051
Downstream genePwcr1, LOC664788, Snrpn, Snurf, EG664849, LOC100041201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500J21.T7 (MSMg01no500_j21.b1)MSMg01-500J21.TJ (MSMg01no500_j21.g1)
ACCAG576415AG576416
length697690
length of high quality
(start - end)
537 (35 - 571)551 (57 - 607)
definitionCHROMAT_FILE: MSMg01no500_j21.b1 PHD_FILE: MSMg01no500_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:17 2005CHROMAT_FILE: MSMg01no500_j21.g1 PHD_FILE: MSMg01no500_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGGTG
CCCTGTTCTTGGTGGAGCAGGGAACGGCTGCCATTGATTATGTCCAGGCC
CTTCGGGACATGGAGCATGCCTAGGGCCCTGGTTTCTCCCAGGTTTGGAG
CTTAGGCCCATTGTTCCCTGGCAGTGGATTGGCAGTGTCCAGCAGTCCAT
TGCTCTCCCCAAAGCCAAAGCACTCCAGAGTACTGGAACCACTTGATGCA
ATGCACTCCAACGTGCTTGGATCTATGATGATTCCCAGTCAAACATTCCT
TGGAAAAGCTGAACAAAATGAGTGAAAACTCTGTACCGCCACTCTCATCG
GAACTGAGGTCCAGCATCTTGGGGCTCCCAGGTGCTATGGGCGTCAGGCA
CAGGCTGCCCAACCACTCTATTGTTCTTGACTTCTTCGGGCTCTAGCCAG
ACTCTCCAGAGACAGGTGTGTGCTTGGCCTACTCTGCCAAAAATCCATGG
TGTAGGACACAGCAGGTCCTTAAGCTCTGGTGGCTTGCTCCCTTTGCTGT
AGTGGAGATGCTTGGCAGATACTCAGTAGGTAGTCGTGCTAGGTCCAAGG
AGAGGGCCCCAACCATTGTTGAAATTAGACTGTGAGGCAAAAGTAGCAGT
GGCAGTAGCACCCAATCTTGGCTTTTCACATGGGAATATCAAGCAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTCTGAAGTAAGAATGACTAATAAATGACACAACCATCTGTCCT
GAGGTCCAAGTGGAGGGCACCTACATGAGTTTTATGACTGCTTTGTTTGC
TGTGCTTTTGAAAGTCATTTCCCAGAAAAATCAAATAGACATGTCACAAT
ACTCATGCTATGCTATGGTAGCAGAATGGCTCAATGTTCAATCGCAAAAT
GTCAAAGACTATTCATGGTTTTCATGAAAAAGAATGAGTTTTCTCAAGAA
TTTATGTTAGGAAAGTTCTGATTTTATTATTTTATACTTTATTGTCTCTA
GAAGGCAATACAACAATGTTTCTATCTTTAAACTTTTAACATTAGGAAAC
CTAATATAATCCTCAATGTTAGTTCTAATTACTCTTTTTATGTTGTTTTA
CATAACAGGCAGAGTAAAGAAAAAGTCACTAATAATATCCTGTTTTGACA
AATATTTCATAACGTCTTCACTTAGTGGCATTCATCTCATTATTTTCTAC
TGTAAACATATTAATAAACAATGCATTCTGATCTGCAAAAAATATTTTAT
CTTATTAGTTCTTATTAGTTCTTTGGGAATTTCATGAAATGTATTTTGAT
TATATTTACCCCTACCTACCAAGTACTGACATATACACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_j21.g1 MSMg01no500_j21.g1 CHROMAT_FILE:
MSMg01no500_j21.g1 PHD_FILE: MSMg01no500_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:17 2005
         (551 letters)



>mm_chr7_66892807_66893757
          Length = 951

 Score = 1042 bits (539), Expect = 0.0
 Identities = 548/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgaagtaagaatgactaataaatgacacaaccatctgtcctgaggtccaagtggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgaagtaagaatgactaataaatgacacaaccatctgtcctgaggtccaagtggagg 260

                                                                       
Query: 61  gcacctacatgagttttatgactgctttgtttgctgtgcttttgaaagtcatttcccaga 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacatacatgagttttatgactgctttgtttgctgtgcttttgaaagtcatttcccaga 320

                                                                       
Query: 121 aaaatcaaatagacatgtcacaatactcatgctatgctatggtagcagaatggctcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatcaaatagacatgtcacaatactcatgctatgctatggtagcagaatggctcaatg 380

                                                                       
Query: 181 ttcaatcgcaaaatgtcaaagactattcatggttttcatgaaaaagaatgagttttctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaatcgcaaaatgtcaaagactattcatggttttcatgaaaaagaatgagttttctca 440

                                                                       
Query: 241 agaatttatgttaggaaagttctgattttattattttatactttattgtctctagaaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatttatgttaggaaagttctgattttattattttatactttattgtctctagaaggc 500

                                                                       
Query: 301 aatacaacaatgtttctatctttaaacttttaacattaggaaacctaatataatcctcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacaacaatgtttctatctttaaacttttaacattaggaaacctaatataatcctcaa 560

                                                                       
Query: 361 tgttagttctaattactctttttatgttgttttacataacaggcagagtaaagaaaaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttagttctaattactctttttatgttgttttacataacaggcagagtaaagaaaaagt 620

                                                                       
Query: 421 cactaataatatcctgttttgacaaatatttcataacgtcttcacttagtggcattcatc 480
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 cactaataatatcctgttttcacaaatatttcataatgtcttcacttagtggcattcatc 680

                                                                       
Query: 481 tcattattttctactgtaaacatattaataaacaatgcattctgatctgcaaaaaatatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcattattttctactgtaaacatattaataaacaatgcattctgatctgcaaaaaatatt 740

                      
Query: 541 ttatcttatta 551
           |||||||||||
Sbjct: 741 ttatcttatta 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)