BAC Information

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BAC

Clone NameMSMg01-500P15
Chromosome7 (Build37)
Map Location 6,082,624 - 6,082,824
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c
Downstream geneZfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500P15.T7 (MSMg01no500_p15.b1)MSMg01-500P15.TJ (MSMg01no500_p15.g1)
ACCAG576685AG576686
length651587
length of high quality
(start - end)
70 (205 - 274)198 (367 - 564)
definitionCHROMAT_FILE: MSMg01no500_p15.b1 PHD_FILE: MSMg01no500_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:43 2005CHROMAT_FILE: MSMg01no500_p15.g1 PHD_FILE: MSMg01no500_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACAGATTTTCTAATTGANGGAANNANCNNTTTNCCNNCACCGGGAGCAG
AAAAGCANCNCCACCCNNCGGACANCNCCCGATTCTCCCCCAACACACTT
CCCACCCAACCCCCACCCCCAGNCAGGGAGGAAGGCTGGGACCCCGCNCN
CCACNNNGGNNNNGGCNCCCACCCANAAACACGNGCAACTCCAGCTGNCC
NGNGCTCTATTTTTTTGGGGGCAATTTCAGCATCTGCTCAAATACTGGGA
CTCCAGTAATACATACAGCTTCAGACTTTAGTGCTTTGNCCCCGGAAGNG
GGCGGAGCCTGAAAGCCACCTGTTTTCTCCTCCACTAGTGGGGTAAATTC
CTCTAAAAACAGTTTCCTCTCCCCTCCCCTTCACCCCCACTCCCTTTTTG
TTTTGCTACAGAACCTTATGTAGCCCAGGCTAACCTCAAATTTGATATAT
AACTGAGGCTAGTCTCAAACTGCTAATCCTCCTGCCTTACTCCGCTTTCA
TAGTGCTGGGATCATAGACAAATACCACCGTGTCTAGCTCCCTTCTTTCT
TGTTTCTCCTTCCAAGCATCTAGAAACATTCAGTTACCCTTTTTTTTTTT
TTAAAAAAAAACCCTACAGAAACAATTTTCTTTGCTATGCATGGCGGCAT
C
GGTTTCAAGGACCGGNAGANCNCAGCTGCTCCTGCTCTTTCTCCTCCTCC
CACTGTCCACTCTCTCACTGGACAGCAGCAGCCCACCCTATTCAGCCTGC
TTTATGGAGAGTATGGCTGCATGACTAGCTGGGAACAGGTTTGGGCAGGG
GACTTATGTGCCATTTTCAAGTCTTCCAAGAGCCTTTTTGGAAGGGGGGA
GGGAAGAATTGGCATCAAGAAACATGTCAAGCACTATCCTATATATTAAA
ATTCNCTCANCTGGCATGTCCCCAAATCACCTGGGCTGGAACAGTGTGCC
CAAGACACTACACCTAACGCTGGATCCCTTCTGATCCTGCAGCTGTAGGG
ATCTGGCCCCACCCTGGACTGGCACTGAGGAGCATCTGGAACAAAGCATG
CCATGGTAACTGCCAACACCATTTCAGTATTGGGCCCAGAAACAATCTAC
TCCAAGCTCCTCCTCCTCCGCCTCCGCCCCTTCACTGAACAGTAGCAGCC
ATCAAGATGCAGCCTGCTCTGCAGAGAATGCTGATATATGGCTGATGAGT
GACCAGAACTTGGACCATTGATAGAGGGGCGTGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_p15.g1 MSMg01no500_p15.g1 CHROMAT_FILE:
MSMg01no500_p15.g1 PHD_FILE: MSMg01no500_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:43 2005
         (198 letters)



>mm_chr7_6082424_6083024
          Length = 601

 Score =  366 bits (189), Expect = e-106
 Identities = 197/201 (98%), Gaps = 3/201 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactggcactgaggagcatctggaacaaagcatgccatggtaactgccaacaccatttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactggcactgaggagcatctggaacaaagcatgccatggtaactgccaacaccatttca 260

                                                                       
Query: 61  gtattgggcccagaaacaatctactccaagctcctcctcctcc---gcctccgccccttc 117
           |||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 261 gtattgggtccagaaacaatctactccaagctcctcctcctcctccgcctccgccccttc 320

                                                                       
Query: 118 actgaacagtagcagccatcaagatgcagcctgctctgcagagaatgctgatatatggct 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgaacagtagcagccatcaagatgcagcctgctctgcagagaatgctgatatatggct 380

                                
Query: 178 gatgagtgaccagaacttgga 198
           |||||||||||||||||||||
Sbjct: 381 gatgagtgaccagaacttgga 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 601
Length adjustment: 8
Effective length of query: 190
Effective length of database: 593
Effective search space:   112670
Effective search space used:   112670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)