Query= MSMg01no501_c19.b1 MSMg01no501_c19.b1 CHROMAT_FILE:
MSMg01no501_c19.b1 PHD_FILE: MSMg01no501_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:58 2005
(575 letters)
>mm_chr7_86557129_86558103
Length = 975
Score = 1025 bits (530), Expect = 0.0
Identities = 566/580 (97%), Gaps = 6/580 (1%)
Strand = Plus / Plus
Query: 1 atcttttaaccagccta-attgagtcctttacaaactgccgactgggctctacagactgc 59
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttttaaccagcc-acattgagtcctttacaaactgccgactgggctctacagactgc 259
Query: 60 atcacctgatccgtgtttgtgggatggcggactgagagcgaagagacacgtcgctcagga 119
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attacctgatctgtgtttgtgggatggcggactgagagcgaagagacacgtcgctcagga 319
Query: 120 aagaactgagccccacggaaccgttggctcattttcttatttcttcaattatattaggtg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagaactgagccccacggaaccgttggctcattttcttatttcttcaattatattaggtg 379
Query: 180 tttgatcttttaaagacttccgttgtaaaaagcttcaaggatcttcagctcctccaaggc 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgatcttttaaagacttctgttgtaaaaagcttcaaggatcttcagctcctccaaggc 439
Query: 240 tccaagtttcttcatactctcgtcccccagagaacttgtgtttcaaccatgatcttagaa 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccaagtttcttcagactctcgtcccccagagaacttgtgtttcaaccatgatcttagaa 499
Query: 300 gtggtgaggaacaggtgagctgatgaaccatattccaaatgtgtttgagggtccgggtta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtggtgaggaacaggtgagctgatgaaccatattccaaatgtgtttgagggtccgggtta 559
Query: 360 gagaaagcggggcggagccatgcttaggacttctccgagaacactggcggctgtagctaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagaaagcggggcggagccatgcttaggacttctccgagaacactggcggctgtagctaa 619
Query: 420 tgactgtaaggttggagcttcagcccttcacattggtggaagaaaatgttcctatattga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgactgtaaggttggagcttcagcccttcacattggtggaagaaaatgttcctatattga 679
Query: 480 aggaaaaaaaccaactttccatctctgggccttatttcctagacacctgatgtataacaa 539
|||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 680 aggaaaaaaaacaactttccatctctgggcctaatttcctaaacacctgatgtataacaa 739
Query: 540 gaatatagaacattgtcttttttttt----ctccttgata 575
|| ||||||||||||||||||||||| ||||||||||
Sbjct: 740 gagtatagaacattgtctttttttttttttctccttgata 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_c19.g1 MSMg01no501_c19.g1 CHROMAT_FILE:
MSMg01no501_c19.g1 PHD_FILE: MSMg01no501_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:58 2005
(249 letters)
>mm_chr7_86730139_86730787
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Minus
Query: 1 tgtgcaagcgagagcattctcagagtcagacatggccctccagggcctagcttgtctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgtgcaagcgagagcattctcagagtcagacatggccctccagggcctagcttgtctctc 390
Query: 61 atgttggcttcatggttgtgactccgttaagttttttactccctttaagagcaaatgtgc 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 389 atgttggcttcatggttgtgactccgttaagtttttgactccctttaagagcaaatgtgc 330
Query: 121 ctttcccagggatctccaacccagcccatctctctccacctcattggctacgaaacattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctttcccagggatctccaacccagcccatctctctccacctcattggctacgaaacattt 270
Query: 181 aaaccacagcctctacgttctttgccatgcctccctttgatggcgtcctttgagtcggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaaccacagcctctacgttctttgccatgcctccctttgatggcgtcctttgagtcggag 210
Query: 241 tgaggtgac 249
|||||||||
Sbjct: 209 tgaggtgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
