BAC Information

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BAC

Clone NameMSMg01-501N18
Chromosome7 (Build37)
Map Location 149,518,924 - 149,519,553
singlet/doubletsinglet
Overlap gene6330512M04Rik
Upstream geneTmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015
Downstream geneCtsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501N18.T7 (MSMg01no501_n18.b1)MSMg01-501N18.TJ (MSMg01no501_n18.g1)
ACCAG577354AG577355
length697761
length of high quality
(start - end)		636 (21 - 656)550 (73 - 622)
definitionCHROMAT_FILE: MSMg01no501_n18.b1 PHD_FILE: MSMg01no501_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:45 2005CHROMAT_FILE: MSMg01no501_n18.g1 PHD_FILE: MSMg01no501_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GACTCACTATTTCGAGAGGATCCGCGGAATTCATGTGAGTTTTGAGGGTT
CATCTTCTGATGTGGAGAGAGGACGCAGGAGCCCCTGAGGCAGTCTCACC
AGTGGAATGGAGGACCCTGGACTGATGAGGAAGCAGGAGGAAAGAAGCGT
TGTCCTCCAGTGGGGGAAGACTGGGGTGGGTCATCAGGTCATCACAGAGT
TGCTGAGAACAGGAAGCTCTGAATGTATCTGGCCCTCAGCTCCTGTGGCC
AGCGGCTAGACAGCATTCAAGCAAGTCATAGACCCTGTGGCTATGCTCAG
TCTCTGCTTCTAGAATATTCCAGAGAGCTCGGGTTCCTACTGAGTCCCCT
GGCTCTGTTGAGGACATGAGAATGAAACAAAACTTGGTCCTTCTTTGGGG
CCTGTGCCCACCATGGCCTGTGTCCCATGTCTTGGGTTGTCCATATCTCC
ACAGCCCACTCACCCGAATTGCCCACTCTGAGGCCTGGCCAGGAACTTTG
GGTCCCCATGAGGGGCCATATGGTTCTGGAAGACTCTCAGGATGCCTCTG
ACCCTCCCAAAGGGGCCCAGGGAGACCTGCAAAATGTCACAGAANAATGA
AAGGCAAGGAGAGGGAGAGACAGCTGCGGCCTCCTGTAAACAGCCTGATT
TCCCAATGCGAACCAGATTGTGGCCTGGGACCTCAGGTAAACATGTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACAGGGTAGTAATCTGGATGAAGGCCC
TGGATGGGTGCTGATTACTGGCTTGCTCAGAATGCTGTCTTATAGAACCT
AGAGCTGCCAACCAAGGACCACGAGTGCAATAGATCCTTTCTCTCCCAAC
TTGTTTATAGTCATTGTGTTGGTTGGAATAAGACTGGCTTCTAGAGAGTT
ATATGTTTAAATGCTTAGTTGTCATGGAATGACAGTACTTGGGAGGGATT
AGGAGGTGTGGTCTTGTTGTTGTATGTGTAGTCTTGCTGGAGGAAGTGTG
TCACTGGGGTTGGGGTTTCAAGTTTCAAAAGCCAGGCCCAGTGGTTTCCC
CTTGCTGTCTGCAGATCCAGATGTAGAACCTGTGTCTCCAGCACCATGTG
GCTGTATGCCACCATACTCCCCAGCATAATGACAGTGGATTAAACCTCTT
AAACTGTAAGCGAACCTCAATTAAATGCTTTCCTTTATAAGAGTTGCTGT
AGTCATGGTGTCTCTTACAGCAATAGAACACTGACCAGAGCCCGGTGTGG
TGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTT
CTGAGTTCGAGGTCATCCTGGTCTCACAAGGGAGTTCCAGGACAGCCAGG
GCTATATAGAAAAAACCTGTCTTGGAAAACTTACTAAACTAATCAAATCC
TATTTTACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_n18.b1 MSMg01no501_n18.b1 CHROMAT_FILE:
MSMg01no501_n18.b1 PHD_FILE: MSMg01no501_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:45 2005
         (636 letters)



>mm_chr7_149518718_149519753
          Length = 1036

 Score = 1189 bits (615), Expect = 0.0
 Identities = 626/630 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatgtgagttttgagggttcatcttctgatgtggagagaggacgcaggagcccct 66
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaattcatgtgaggattgagggttcatcttctgatgtggagagaggacgcaggagcccct 777

                                                                       
Query: 67  gaggcagtctcaccagtggaatggaggaccctggactgatgaggaagcaggaggaaagaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gaggcagtctcaccagtggaatggaggaccctggactgatgaggaagcaggaggaaagaa 717

                                                                       
Query: 127 gcgttgtcctccagtgggggaagactggggtgggtcatcaggtcatcacagagttgctga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gcgttgtcctccagtgggggaagactggggtgggtcatcaggtcatcacagagttgctga 657

                                                                       
Query: 187 gaacaggaagctctgaatgtatctggccctcagctcctgtggccagcggctagacagcat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaacaggaagctctgaatgtatctggccctcagctcctgtggccagcggctagacagcat 597

                                                                       
Query: 247 tcaagcaagtcatagaccctgtggctatgctcagtctctgcttctagaatattccagaga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcaagcaagtcatagaccctgtggctatgctcagtctctgcttctagaatattccagaga 537

                                                                       
Query: 307 gctcgggttcctactgagtcccctggctctgttgaggacatgagaatgaaacaaaacttg 366
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 536 gctcgggttcctactgagtcccctggccctgttgaggacatgagaatgaaacaaaacttg 477

                                                                       
Query: 367 gtccttctttggggcctgtgcccaccatggcctgtgtcccatgtcttgggttgtccatat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtccttctttggggcctgtgcccaccatggcctgtgtcccatgtcttgggttgtccatat 417

                                                                       
Query: 427 ctccacagcccactcacccgaattgcccactctgaggcctggccaggaactttgggtccc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctccacagcccactcacccgaattgcccactctgaggcctggccaggaactttgggtccc 357

                                                                       
Query: 487 catgaggggccatatggttctggaagactctcaggatgcctctgaccctcccaaaggggc 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 catgaggggccatatggttctggaagactctcaggatgcctctgaccctcccaaaggggc 297

                                                                       
Query: 547 ccagggagacctgcaaaatgtcacagaanaatgaaaggcaaggagagggagagacagctg 606
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 296 ccagggagacctgcaaaatgtcacagaaaaatgaaaggcaaggagagggagagacagctg 237

                                         
Query: 607 cggcctcctgtaaacagcctgatttcccaa 636
           ||||||||||||||||||||||||||||||
Sbjct: 236 cggcctcctgtaaacagcctgatttcccaa 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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