BAC Information

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BAC

Clone NameMSMg01-502A21
Chromosome7 (Build37)
Map Location 75,687,175 - 75,862,649
singlet/doubletdoublet
Overlap geneEG384639
Upstream geneLrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800
Downstream geneArrdc4, LOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502A21.T7 (MSMg01no502_a21.b1)MSMg01-502A21.TJ (MSMg01no502_a21.g1)
ACCAG577502AG577503
length690775
length of high quality
(start - end)		679 (7 - 685)612 (70 - 681)
definitionCHROMAT_FILE: MSMg01no502_a21.b1 PHD_FILE: MSMg01no502_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:00 2005CHROMAT_FILE: MSMg01no502_a21.g1 PHD_FILE: MSMg01no502_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,687,175 - 75,687,847)(75,862,038 - 75,862,649)
sequence
CGAGGATCCGCGGAATTCAGTCTGAATTCTCATTTCTTGCTTCAGGGATA
ATTAGATAATGAATGGTAATACAGTGATTAAAAAGTAAAAAGCATTACTC
CAGAGGCAGTTTTTCCTATGTCACAACCATGGGAAAGATGAAACTAGTTT
AGACAAACATTTAAGGGAAAAGATGACGGAAGAATGAAAAGGTTGCAGTT
CTTCAATAAGTCTGCCACATTCAAGCGAGTAGAATCTCAGTTAACAATGG
CCCCAGTTTGCTTAGTGATCATTTTCCTAAGCGTAAATTCTGATGCCTCC
AGCAAAACATGGCTCCCTTTGTTAATTGCAACTTCAGTGGCCTCCCTGGG
GGTCCCTCCTCTCCTGCACCCTTGTAAAAAAGTGTGCATGCCTGTGGCTG
TCTCCACAGCCTTTGAAAAAGCCGTATAAAAGGCCCCTTTTGACATTTCC
CTAGCCCCCCTTTTCTCCTTTCTAAGTTTCATTGAACATTAAAAGTTTTT
ACGAGTATGGAAGAAAGGCATCTTGCCACTTGAAGTTAAGGTGTGATTCA
AATTATAGGATGGCAGAGTCCATTTCTAAAGTGGTATTTAACAAGTTTCA
CAGATATCTTCTTTTATAGGACATTTCTCCTGGTGTAGAGACGTAGAAAA
TGTGACAGATTTTTAAGAAGTCTCTATAACTGTCCTTTTG

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACACAATGAGCAGCATTTGGAGGCGTGCCAG
CTTGCTCTCCAGCTTCCTTCTCGCTGCTTGTTATTCAGAATTCAGGTCAG
TTTCTATCTCCAGATCTCCCCTATCCTCCGTTATCGGATTTCAGCTTTGG
TTTCTCTCTGGGACAGCGCATAAACATTGTAACTGGGTCATGCTCTGACT
TCAGTCCCTTGTGTCATCCCGAGAGCAATTGGCTGGACTTGTGCAACAGA
AGGGACTGATGCGGAGTCAGGAAATCCGAGCAATCTCCCCATCGGGAGGG
GTCAGGGAACAAAACTCTATGGCCCATTGTATTGAGCGAAGACTGATCCC
TATTTGAAAAGCCCAACTATGGAAGCCAGGGTGGTTTGCAGATAACTTTA
TCTATGTTTCCTCTGAAAACCAGATCCTCACTAAAAGACATTCTTGAGTA
CTTTCTACACGCAGGTGTATCACTGCAGGGAACAAAGCAATCAGAGGCTT
ACGGCATCTTGGGGAAAAGACAAACAAACAATAAATAAGACAGCCAATAA
ATTACGTCACTGCCAGTGCTGGTGGATGACATGAAAATAAGCCGAGGAGA
CCAGGAAGGGCTAGGTGGGAGATGGGGGAGGGGGAGTATGAAGTNACTTT
TTCTNNTTNTAATTCNCTCTCTATCGTTTCCTCTCTATTGTTAAAAGATT
GCCCCTGTTGTTAGGTGTTAATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_a21.b1 MSMg01no502_a21.b1 CHROMAT_FILE:
MSMg01no502_a21.b1 PHD_FILE: MSMg01no502_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:00 2005
         (679 letters)



>mm_chr7_75686969_75688047
          Length = 1079

 Score = 1270 bits (657), Expect = 0.0
 Identities = 669/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcagtctgaattctcatttcttgcttcagggataattagataatgaatggtaatac 66
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 207 gaattcagtctgaattctcatttcttgcttcagggataattagataacgaatagtaatac 266

                                                                       
Query: 67  agtgattaaaaagtaaaaagcattactccagaggcagtttttcctatgtcacaaccatgg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtgattaaaaagtaaaaagcattactccagaggcagtttttcctatgtcacaaccatgg 326

                                                                       
Query: 127 gaaagatgaaactagtttagacaaacatttaagggaaaagatgacggaagaatgaaaagg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaaagatgaaactagtttagacaaacatttaagggaaaagatgacggaagaatgaaaagg 386

                                                                       
Query: 187 ttgcagttcttcaataagtctgccacattcaagcgagtagaatctcagttaacaatggcc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgcagttcttcaataagtctgccacattcaagcgagtagaatctcagttaacaatggcc 446

                                                                       
Query: 247 ccagtttgcttagtgatcattttcctaagcgtaaattctgatgcctccagcaaaacatgg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccagtttgcttagtgatcattttcctaagcgtaaattctgatgcctccagcaaaacatgg 506

                                                                       
Query: 307 ctccctttgttaattgcaacttcagtggcctccctgggggtccctcctctcctgcaccct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctccctttgttaattgcaacttcagtggcctccctgggggtccctcctctcctgcaccct 566

                                                                       
Query: 367 tgtaaaaaagtgtgcatgcctgtggctgtctccacagcctttgaaaaagccgtataaaag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgtaaaaaagtgtgcatgcctgtggctgtctccacagcctttgaaaaagccgtataaaag 626

                                                                       
Query: 427 gccccttttgacatttccctagccccccttttctcctttctaagtttcattgaacattaa 486
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gccccttttgacatttccctacccccccttttctcctttctaagtttcattgaacattaa 686

                                                                       
Query: 487 aagtttttacgagtatggaagaaaggcatcttgccacttgaagttaaggtgtgattcaaa 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aagtttttacgagtatggaagaaaggcatcttgccacttgaagttaaggtgtgattcaaa 746

                                                                       
Query: 547 ttataggatggcagagtccatttctaaagtggtatttaacaagtttcacagatatcttct 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttataggatggcagagtccatttctaaagtggtatttaacaagtttcacagatatcttct 806

                                                                       
Query: 607 tttataggacatttctcctggtgtagagacgtagaaaatgtgacagatttttaagaagtc 666
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 807 tttataggacatttctcctggtgtagagacgtagaaaatgtgacagattttttagaagtc 866

                        
Query: 667 tctataactgtcc 679
           |||||||||||||
Sbjct: 867 tctataactgtcc 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_a21.g1 MSMg01no502_a21.g1 CHROMAT_FILE:
MSMg01no502_a21.g1 PHD_FILE: MSMg01no502_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:00 2005
         (612 letters)



>mm_chr7_75861838_75862849
          Length = 1012

 Score = 1176 bits (608), Expect = 0.0
 Identities = 611/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacaatgagcagcatttggaggcgtgccagcttgctctccagcttccttctcgctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 acacaatgagcagcatttggaggcgtgccagcttgctctccagcttccttctcgctgctt 753

                                                                       
Query: 61  gttattcagaattcaggtcagtttctatctccagatctcccctatcctccgttatcggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gttattcagaattcaggtcagtttctatctccagatctcccctatcctccgttatcggat 693

                                                                       
Query: 121 ttcagctttggtttctctctgggacagcgcataaacattgtaactgggtcatgctctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttcagctttggtttctctctgggacagcgcataaacattgtaactgggtcatgctctgac 633

                                                                       
Query: 181 ttcagtcccttgtgtcatcccgagagcaattggctggacttgtgcaacagaagggactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttcagtcccttgtgtcatcccgagagcaattggctggacttgtgcaacagaagggactga 573

                                                                       
Query: 241 tgcggagtcaggaaatccgagcaatctccccatcgggaggggtcagggaacaaaactcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgcggagtcaggaaatccgagcaatctccccatcgggaggggtcagggaacaaaactcta 513

                                                                       
Query: 301 tggcccattgtattgagcgaagactgatccctatttgaaaagcccaactatggaagccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tggcccattgtattgagcgaagactgatccctatttgaaaagcccaactatggaagccag 453

                                                                       
Query: 361 ggtggtttgcagataactttatctatgtttcctctgaaaaccagatcctcactaaaagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggtggtttgcagataactttatctatgtttcctctgaaaaccagatcctcactaaaagac 393

                                                                       
Query: 421 attcttgagtactttctacacgcaggtgtatcactgcagggaacaaagcaatcagaggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 attcttgagtactttctacacgcaggtgtatcactgcagggaacaaagcaatcagaggct 333

                                                                       
Query: 481 tacggcatcttggggaaaagacaaacaaacaataaataagacagccaataaattacgtca 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tacagcatcttggggaaaagacaaacaaacaataaataagacagccaataaattacgtca 273

                                                                       
Query: 541 ctgccagtgctggtggatgacatgaaaataagccgaggagaccaggaagggctaggtggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctgccagtgctggtggatgacatgaaaataagccgaggagaccaggaagggctaggtggg 213

                       
Query: 601 agatgggggagg 612
           ||||||||||||
Sbjct: 212 agatgggggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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