BAC Information

Click to search

BAC

Clone NameMSMg01-502C12
Chromosome7 (Build37)
Map Location 49,764,217 - 49,764,782
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263
Downstream geneLOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502C12.T7 (MSMg01no502_c12.b1)MSMg01-502C12.TJ (MSMg01no502_c12.g1)
ACCAG577578AG577579
length705735
length of high quality
(start - end)
564 (51 - 614)667 (69 - 735)
definitionCHROMAT_FILE: MSMg01no502_c12.b1 PHD_FILE: MSMg01no502_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:07 2005CHROMAT_FILE: MSMg01no502_c12.g1 PHD_FILE: MSMg01no502_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCAAATAGGAGGCGCGGAATTCACAGTTACAAAAAAACTCTCANGN
ATTGGGATTAAAGGAATGTGTCACACTATGCCTGGCTGCACACTGTTATT
GCTTTATAACAAAGTTGATTTTAAAGGGAATGCTTTATATGCTCAATATA
CACATTAATTCTTTTTCAGCCACCTTGTCCTTAGCCAGGTGAAGTGACAT
ATGACTTTAGTCCAAATTTTCACTTGGTAGAAACAGGCAAATATCTGTGA
GTGTGTGGCCATTTGGGTCTACATAGTGAGTTTCATGNNATCTGGTATAT
AGAGAGAGACTCTCTGTCAAAAAATAAAACAACACACAGATACCAAGCTC
GCCAATGAGTTGCTCATTTACTACACTGCCAACAGCATGCCGGGTTGCAT
TGTAGAGCCTCATACTTTTGCCATGGTGACATTTGTGGGGCGTTAGTTTG
TGAACAACACCCATTCCTCATGTATCTAAATACCACTTTTCTTATACGTT
CTCCTATATCTGACCAAAGGGAAGACCCCCGTTCTCTTAGGGGCCTAACA
CAGAAGGCACCGCTCATCTTCCTTGTTTGTCATTTTAAAGAATTACTGCC
AAATGATGAAAACGTTTGTTCCCGTTTTTATTTCTGAGTGTACTCTGGAT
CTATGATTCACAGTCAGGTGTAGTTAACAATGGCTTTTCTCTCACTCTGT
GTGTN
CATGATAGTGGTAGGCCGGGNGGCCGCCTTTTCGAAAAATTTAGGTGAAC
TATAGATTGCTCCACGGAATTCTCTGTTTAGCTCTATTCTCCCTTTTTTT
TAATAGGAATATTTGGTACTCAGCAGTCTATCTTCTTTTTTTTGTTTTGT
TTTGTTTTGTTTTATATATATATATATTTGTTTTTGAGACAGGGTTTCTC
TGTATAACCCTGGCTGTCCTGAAACTCACTTTTTAGACCAGGCTGGCCTC
GAACTCAGAAATCCTCCTGCCTCTGCCTCCAGAGTGCTAGGATTAAAGGC
GTGCCCCATTATTTTTGGCTTTTTTTTTTCCAGTCTAACTTTTTGAGAAC
TTTGTTTATATTGGATATTACACCTCTATCAGATGTAAGACTGGTAAAGA
TCCTTTCCCAATCTGTTGGCTGCTGTTTTGTTCTATTGACAGTGTCCTTT
GCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATACTTGA
TCTTGTATCTGGATTTATGTGGAGGTCCTTGATCCACTTGGACATGAGCT
TTATACAAGGAGATAAGAATGGATCAACTTGTATTCTTCCACATGTTGAC
TGCCAGTTGAACCAGCACCATTTGTTGAAAATGCTGTCCTTTTATCACTG
GATGGTTTTAGCTCCTTTGTCAAAAATCAAGTGACTGTAGGTGTGTGGGT
TCATTTCTGGGTCTTCAATTCTATTCTATTGATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_c12.b1 MSMg01no502_c12.b1 CHROMAT_FILE:
MSMg01no502_c12.b1 PHD_FILE: MSMg01no502_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:07 2005
         (564 letters)



>mm_chr7_49764019_49764982
          Length = 964

 Score =  980 bits (507), Expect = 0.0
 Identities = 551/569 (96%), Gaps = 8/569 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgggattaaaggaatgtgtcacactatgcctggctgcacactgttattgctttataac 60
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 199 attgggattaaaggaatgtgtcacactatgcccggctgcagactgttattgctttataac 258

                                                                       
Query: 61  aaagttgattttaaagggaatgctttatatgctcaatatacacattaattcttttt-cag 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 259 aaagttgattttaaagggaatgctttatatgctcaatatacacattaattcttttttcag 318

                                                                       
Query: 120 ccaccttgtccttagccaggtgaagtgacatatgactttagtccaaattttcacttggta 179
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 319 ccaccttgtccttagccaggtgaagtgacatatgactttagtccaaaaactcacttggta 378

                                                                       
Query: 180 gaaacaggcaaatatctgtgagtgtgtggccatttgggtctacatagtgagtttcatgnn 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  
Sbjct: 379 gaaacaggcaaatatctgtgagtgtgtggccatttgggtctacatagtgagtttcagg-- 436

                                                                       
Query: 240 at----ctggtatatagagagagactctctgtcaaaaaataaaacaacacacagatacca 295
            |    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 437 -tttacctggtatatagagagagactctctgtcaaaaaataaaacaacaaacagatacca 495

                                                                       
Query: 296 agctcgccaatgagttgctcatttactacactgccaacagcatgccgggttgcattgtag 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agctcgccaatgagttgctcatttactacactgccaacagcatgccgggttgcattgtag 555

                                                                       
Query: 356 agcctcatacttttgccatggtgacatttgtggggcgttagtttgtgaacaacacccatt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agcctcatacttttgccatggtgacatttgtggggcgttagtttgtgaacaacacccatt 615

                                                                       
Query: 416 cctcatgtatctaaataccacttttcttatacgttctcctatatctgaccaaagggaaga 475
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 616 cctcatgtatctaaataccacttttcttatacattctcctatatctgaccaaagggaaga 675

                                                                       
Query: 476 cccccgttctcttaggggcctaacacagaaggcaccgctcatcttccttgtttgtcattt 535
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 676 cccccgttctcttaggggcctaacacagaaggcactgctcatcttccttgtttgtcattt 735

                                        
Query: 536 taaagaattactgccaaatgatgaaaacg 564
           ||||||||||||||||||||||| |||||
Sbjct: 736 taaagaattactgccaaatgatggaaacg 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)