Query= MSMg01no502_g01.b1 MSMg01no502_g01.b1 CHROMAT_FILE:
MSMg01no502_g01.b1 PHD_FILE: MSMg01no502_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:24 2005
(597 letters)
>mm_chr7_78395302_78396298
Length = 997
Score = 1089 bits (563), Expect = 0.0
Identities = 587/597 (98%), Gaps = 4/597 (0%)
Strand = Plus / Plus
Query: 1 cactactagaccgttactagtaagaaacctaaggcaccaagatcaggatgcaatggtagg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cactactagaccgttactagtaagatacctaaggcaccaagatcaggatgcaatggtagg 260
Query: 61 atactaccagtacagttgggaagatggggagcctgataggtgaaatggcataggatacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atactaccagtacagttgggaagatggggagcctgataggtgaaatggcataggatacat 320
Query: 121 gagtgaaagagggctggggtaagggcaaaagaagaaagaataggaaagaaaacaagaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtgaaagagggctggggtaagggcaaaagaagaaagaataggaaagaaaacaagaagg 380
Query: 181 agaaaatagaaaagatgagaaataaaaaagttcaaaattcctgggatgtgcaaagccata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaatagaaaagatgagaaataaaaaagttcaaaattcctgggatgtgcaaagccata 440
Query: 241 tcttgagttctagtgaaatatctgagagtggtttccagaaatgaggtcccccaacttctg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tcttgagttctagtgaaatatctgagagtggtttccagaaatggggtcccccaacttctg 500
Query: 301 atatagtcaatcccctgtctttatagacacctgagtaataatgacaagatattcagatat 360
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 atatagtcaatcccctttctttatagacacctgagtaataatgacaagatattcggatat 560
Query: 361 caggacagcagtaacaaccagaggggcaacatcttgttatagctgttgacatgaagaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggacagcagtaacaaccagaggggcaacatcttgttatagctgttgacatgaagaatt 620
Query: 421 gaggagagccagagagccttatagaaaacattcgagtaatgaggattatgagagtaatca 480
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gagcagagccagagagccttatagaaaacattctagtaatgaggattatgagagtaatca 680
Query: 481 tgagatcattgtcacaattaagtttatagcaactgctgctgttgctgtaagccctaacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagatcattgtcacaattaagtttatagcaactgctgctgttgctgtaagccctaacaa 740
Query: 541 catggcatgtgtcttcctcaaatatgtgtaggggtgtgtgtgtgtgtgtgtgtgtgt 597
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 catggcatgtgtcttcctcaaatatgtgt----gtgtgtgtgtgtgtgtgtgtgtgt 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_g01.g1 MSMg01no502_g01.g1 CHROMAT_FILE:
MSMg01no502_g01.g1 PHD_FILE: MSMg01no502_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:24 2005
(476 letters)
>mm_chr7_78548705_78549579
Length = 875
Score = 358 bits (185), Expect = e-103
Identities = 198/203 (97%), Gaps = 3/203 (1%)
Strand = Plus / Minus
Query: 1 gtctggccctaaataccagctgactttacaattcaaatgtaattgctgatacacttaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtctggccctaaataccagctgactttacaattcaaatgtaattgctgatacacttaaaa 320
Query: 61 acaaaacaaaaacaaaaaaaacacttccaggaaactgtaaatgcttgttttatcttataa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acaaaacaaaaa-aaaaaaaacacttccaggaaactgtaaatgcttgttttatcttataa 261
Query: 121 tgagtgacagtattttatatttcaagaatctgagcatggagaccagaaaatgcacatcta 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgagtgacagtattttatatttgaagaatctgagcatggagaccagaaaatgcacatcta 201
Query: 181 tatctatatctatatctatatct 203
||||||||| ||||| ||||||
Sbjct: 200 tatctatatatatat--atatct 180
Score = 103 bits (53), Expect = 3e-26
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 412 tatatatatatatgtatatatcttttagcaggcttaatctgtagagaaaaccttgaaaaa 471
||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 202 tatatctatatatatatatatcttttagcaggcttagtctgtagagaaaaccttgaaaaa 143
Query: 472 aaaaa 476
|||||
Sbjct: 142 aaaaa 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space: 403090
Effective search space used: 403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
