Query= MSMg01no502_g11.b1 MSMg01no502_g11.b1 CHROMAT_FILE:
MSMg01no502_g11.b1 PHD_FILE: MSMg01no502_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:26 2005
(574 letters)
>mm_chr7_138956819_138957791
Length = 973
Score = 1056 bits (546), Expect = 0.0
Identities = 567/578 (98%), Gaps = 9/578 (1%)
Strand = Plus / Plus
Query: 1 aaaagcctgcaggaaaagggagggaaatctcccctttgtcctttaccttgtctcctttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagcctgcaggaaaagggagggaaatctcccctttgtcctttaccttgtctcctttgg 260
Query: 61 ctgccatcagatgagcaagggatgcagagggtcactctataggctcagtgcatcctttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccatcagatgagcaagggatgcagagggtcactctataggctcagtgcatcctttag 320
Query: 121 agaatattattatctgttctcaaagtaaatggcacaaaaccaacaggagcataagctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatattattatctgttctcaaagtaaatggcacaaaaccaacaggagcataagctggg 380
Query: 181 acaggcgtaattaatggtgtttatttttcattaggaagccagaacaatgccctaattgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggcgtaattaatggtgtttatttttcattaggaagccagaacaatgccctaattgct 440
Query: 241 agcagatttttt----gatctgccttatttgtaaacagtggttcacaagaaaaaaaaagt 296
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 agcagatt----ccaggatctgccttatttgtaaacagtggttcacaagaaaaaaaa-gt 495
Query: 297 cattaacagaacaaatagccaatttagagcaaacaattgtgcttacacaatatagttgaa 356
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 496 cattaacagaacaaatagccaaattagagcaaacaattgtgcttacacaatatagttgaa 555
Query: 357 ggtttaaaggatgttttttaaaagctttgtctcttacccacatctgaatctctgtgcctg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggtttaaaggatgttttttaaaagctttgtctcttacccacatctgaatctctgtgcctg 615
Query: 417 gcttgacagacctcatccacagactcccaaggaccaggccagtctttctggatttatcat 476
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 616 gcttgacagacctcatccacagactcccaaggaccagaccagtctttctggatttatcat 675
Query: 477 ttcattttcataggttattcccctggctataaaactaactcgttaccattgtgaaaagat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttcattttcataggttattcccctggctataaaactaactcgttaccattgtgaaaagat 735
Query: 537 tattaactatagaaataacagagaagaccagagtccac 574
||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tattaactatagaaataacagagaagaccagagtccac 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space: 543132
Effective search space used: 543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_g11.g1 MSMg01no502_g11.g1 CHROMAT_FILE:
MSMg01no502_g11.g1 PHD_FILE: MSMg01no502_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:26 2005
(603 letters)
>mm_chr7_139132284_139133286
Length = 1003
Score = 1125 bits (582), Expect = 0.0
Identities = 597/602 (99%)
Strand = Plus / Minus
Query: 1 tcccaacaagatctgaggggcatgttttttcttttcctccaatgttaccaatgcagtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tcccaacaagatctgaggggcatgttttttcttttcctccaatgttaccaatgcagtggt 701
Query: 61 ttgagtctgccatgtgttcagctgtgtggtcaggacacatggagaaaggcgtcaccactc 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 700 ttgagtctgccatgtgttcagctgtgtgatcaggacacatggagaaaggcgtcaccactc 641
Query: 121 ggttcctgcttccagcactatgctgaaggtcatgcagtgagtcccgtggacctactgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ggttcctgcttccagcactatgctgaaggtcatgcagtgagtcccgtggacctactgttt 581
Query: 181 cctttgcctcaagagcgttcaggcagctacaaggagctacctcgatggcccttgccattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cctttgcctcaagagcgttcaggcagctacaaggagctacctcgatggcccttgccattc 521
Query: 241 tattgtcttacttttctcctttcaaagaaggtgggaacagcttcatgtcaggattttttt 300
||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tatggccccacttttctcctttcaaagaaggtgggaacagcttcatgtcaggattttttt 461
Query: 301 ttaaagctcctaatgttggctgtggttccatcactacgcaattagaattggtaggttaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttaaagctcctaatgttggctgtggttccatcactacgcaattagaattggtaggttaga 401
Query: 361 tggactgtgtggtgagtccaattacattggtagacattggcagttgaagcaaccagaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tggactgtgtggtgagtccaattacattggtagacattggcagttgaagcaaccagaact 341
Query: 421 tgtctcattagtggaaaagaatccaaaaacttgatccctcatatctgtgtgggctcaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgtctcattagtggaaaagaatccaaaaacttgatccctcatatctgtgtgggctcaatt 281
Query: 481 tctttcaagagtctgggagcttcacgatcacctcagcctgtcaggagcagtgaggagagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tctttcaagagtctgggagcttcacgatcacctcagcctgtcaggagcagtgaggagagc 221
Query: 541 tgtcttgggtcctgaaagcatctctctctctctctctctctctctctctctctctctctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tgtcttgggtcctgaaagcatctctctctctctctctctctctctctctctctctctctc 161
Query: 601 tc 602
||
Sbjct: 160 tc 159
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
