BAC Information

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BAC

Clone NameMSMg01-502J20
Chromosome7 (Build37)
Map Location 133,497,946 - 133,498,148
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495
Downstream geneLat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502J20.T7 (MSMg01no502_j20.b1)MSMg01-502J20.TJ (MSMg01no502_j20.g1)
ACCAG577927AG577928
length757784
length of high quality
(start - end)
579 (9 - 587)206 (73 - 278)
definitionCHROMAT_FILE: MSMg01no502_j20.b1 PHD_FILE: MSMg01no502_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:42 2005CHROMAT_FILE: MSMg01no502_j20.g1 PHD_FILE: MSMg01no502_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATTTGGAGAGGATCCGCGGAATTCCTCACCACCATGGACGTTCTTGT
TGTCAGTGGTCCCCTTATAGCCAAGATCTTGGAGGCCTTCCAACTCCCAG
CAGAGGTTCCCACAATTGATTGCCAGGAACACCAGACCTCCATAGACCCA
GTGCCTCTGGGTAATGCTAGAGCTGACTCAGTGGCCTGGGGTTTCGCTTC
CAGTGCCTCTAGACCCACAAAGCACATCCTCTGCCTGATGTCTTCCTACA
AACCCCAGTACCAGCCAGAGGATAAAACCAAATTCCTTGGCAAAGAGGCC
ACGCAGATGAAAGATGGATGGCTTTACCCGAATCACTGCCTTATTGTTCT
CAGAGGTAGAAGCCTTCCATCATCTCTGACATCTACCAAAGCCTCCACAT
GGCCCCCAGGCCCTACTCCAGTTCCTAGAATCCCTTTTCAATTCCTCTGA
CCTTCAATCCTGTATTGTACAGGCCCACCCATACTGCCAGGTGTGTGCCA
ATACCAACCTGCAGGGGGCGCTCCATAAGTCAGCCTCTGCACCAACTCCG
AGGACACCAACTGGGCAAAAGCTGGAAAACTGACTTCACGCAAATGCCTA
CCCACTAGAAACTCCTCCATCTCCTAACTGTTGTTGACACTTTTATACGT
GGATTGAGGTACTCCCCACCTCCAGAGAAAAGCAGACACGGTGGGGCCAA
CTCTCCTGGACACATCATCTCCTGGTTTGGGCTGAGCACGACCAGCTTTT
TCTTCCA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGAGATCTGCCTGTCCCTTGGCAACGT
GAACATATGAACTGAATTCACATGCGGCTGAGACGGTAATTTACGTTCTG
TGGGAGTTTTTTACTACAGGTTTTAATAACTGAGCACATCAGTTGTCTCC
CACTTTTGCTCTGCTTCCTCTCCAGTCTGGGCTCAGCTCACTTGTTAGAG
TGTGGTGGTGGTGGTGGTGGTGGTGNNTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTTTTTTTNNTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTT
NNTTTTTNTNNNTNTNNNTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTNT
TTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTNTTTNNT
TTTTTTTTTTNTTTTTTTTTTNTTTTTTTTTTTTTTTTTCTTTTTTTTTT
TTTTTTTTTTNTTTTTNTTTNNTTTTCCNTTTTTTTTTTTTTTCTTNTTT
TNTNNTNTTTTNTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTNCNNTTTNTTTTNTTTTTTCCTTTTTNNCCCCTCCTT
TTTTTCTTTTTTTTCCTTTTTTCCTCTTTTCTTTTTTCTTTCTTCTCTTT
TTCCTTTTCCTTCCTTTCCCTCCCTCTTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_j20.g1 MSMg01no502_j20.g1 CHROMAT_FILE:
MSMg01no502_j20.g1 PHD_FILE: MSMg01no502_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:42 2005
         (206 letters)



>mm_chr7_133497746_133498351
          Length = 606

 Score =  385 bits (199), Expect = e-111
 Identities = 202/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagatctgcctgtcccttggcaacgtgaacatatgaactgaattcacatgcggctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggagatctgcctgtcccttggcaacgtgaacatatgaactgaattcacatgcggctgag 260

                                                                       
Query: 61  acggtaatttacgttctgtgggagttttttactacaggttttaataactgagcacatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acggtaatttacgttctgtgggagttttttactacaggttttaataactgagcacatcag 320

                                                                       
Query: 121 ttgtctcccacttttgctctgcttcctctccagtctgggctcagctcacttgttagagtg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ttgtctcccacttttgctctgcttcctctccagtctgggctcggctcacttgttagagtg 380

                                  
Query: 181 tggtggtggtggtggtggtggtg 203
           |||||||||||||||||||||||
Sbjct: 381 tggtggtggtggtggtggtggtg 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)