BAC Information

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BAC

Clone NameMSMg01-502M20
Chromosome7 (Build37)
Map Location 15,026,473 - 15,026,717
singlet/doubletsinglet
Overlap gene2810007J24Rik
Upstream geneGm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123
Downstream geneEG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502M20.T7 (MSMg01no502_m20.b1)MSMg01-502M20.TJ (MSMg01no502_m20.g1)
ACCAG578071AG578072
length768782
length of high quality
(start - end)
600 (36 - 635)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no502_m20.b1 PHD_FILE: MSMg01no502_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:55 2005CHROMAT_FILE: MSMg01no502_m20.g1 PHD_FILE: MSMg01no502_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCTTCTCTGAGCCCCATTTTTTAATGCAGTTATTTGATTTTCATGAGTCC
ACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTGA
GTAGTATCTTTTGCGTTGCAGAAGCTTTGCAGGTTCAAGAGGTCCCATTT
GTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATT
TTCCCTCTATGTTCTCATATCTTTGAGGCTTTTCCCCACTTTCTCCTCCA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACAAGGAGAGAGGAATGGATCTATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTT
TCCACTGTATGGCTTTAGCTCCCTTGTCGAAGATCAAATGACCATAGGTG
TGTGGGTTCATTTCTGTGTCTTCAATTCTATTCCATTGGTCTACTAGTCT
GTCACTATATCAGTACCATGCAGTTTTTAATCACAATTGCTCTGTAGTAA
ATATTTAGGTCAGGGATGGTGATTCCACCAGAGGTTCTTTTATCCCTTAG
AAAAAATTTTGCTATCTTACGGTTTTTGGTATTTCAGATGAAATTTGCAA
TTGCTCCTTTCTATTTGG
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGGAAACACCATGTAATTATTGGA
AGATACAAGCTGTCCCATGGAGTCATCTGCAATACCACATGTGAAGATCT
ACTGTTTTCCCCCATAGGTTAATAAACATTCTGTGCATTTATACCTGTTT
GCTTCTTGCTTATAATGCATCTGATTCAAGTAGACTGACCTATTGATAAG
AATGGTTCCTAAGAAAGCTTTTTCCTATTCCATCTTAGAAGTCATAAAGA
CTAGAACCAGCTCAACACTTTTTTATAAATGTCACGATGTTATGGATCTA
CATAAATATCGACCACAAATACTTGATGTTGGAACAGAACAGACAAAATG
TTCACAATATGACATATGAGGATTCATGTCCTAAGCCAGCGAGAATGTAG
CTGGGCAAGTTCACATTGAATGTTAAAGGATAATGCATGGTTTCAATGCT
ATGTGCTTCTGAGACAATGTGAGGCATAAGGTCATACATAATCTAGGAAG
GCATTCTAAATTGTCTAGAGTTTTTCTGCCATGGCTTATCGTTTCTGATA
TTTGAATATCATATAGGATTTCTTTACATTTTTCTTTCCTTTCTTTCTTC
TTCTTTCTTTCCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTTTCTCCCTCCTCCTCTCCTCNCTTTCCTTT
TTCTTTCTTTAAATTCTCCTCCTTTCCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_m20.g1 MSMg01no502_m20.g1 CHROMAT_FILE:
MSMg01no502_m20.g1 PHD_FILE: MSMg01no502_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:55 2005
         (244 letters)



>mm_chr7_15026273_15026917
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggaaacaccatgtaattattggaagatacaagctgtcccatggagtcatctgcaata 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggaaacaccatgtgattattggaagatacaagctgtcccatggagtcatctgcaata 260

                                                                       
Query: 61  ccacatgtgaagatctactgtttt-cccccataggttaataaacattctgtgcatttata 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacatgtgaagatctactgtttttcccccataggttaataaacattctgtgcatttata 320

                                                                       
Query: 120 cctgtttgcttcttgcttataatgcatctgattcaagtagactgacctattgataagaat 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 cctgtttgcttcttgcttataatgcatctgactcaagtagactgacctattgataagaat 380

                                                                       
Query: 180 ggttcctaagaaagctttttcctattccatcttagaagtcataaagactagaaccagctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttcctaagaaagctttttcctattccatcttagaagtcataaagactagaaccagctc 440

                
Query: 240 aacac 244
           |||||
Sbjct: 441 aacac 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)