BAC Information

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BAC

Clone NameMSMg01-502N10
Chromosome7 (Build37)
Map Location 107,022,635 - 107,022,878
singlet/doubletsinglet
Overlap geneXrra1
Upstream geneUvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2
Downstream geneEG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502N10.T7 (MSMg01no502_n10.b1)MSMg01-502N10.TJ (MSMg01no502_n10.g1)
ACCAG578099AG578100
length744747
length of high quality
(start - end)
225 (295 - 519)244 (324 - 567)
definitionCHROMAT_FILE: MSMg01no502_n10.b1 PHD_FILE: MSMg01no502_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:58 2005CHROMAT_FILE: MSMg01no502_n10.g1 PHD_FILE: MSMg01no502_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTCAAAGAAGGGGNGGAATTCAGCNCCTTCTCAAATCAGAGCTCAGG
CAAAGACATCAAAAGAAAGCTAACACCCATCCATCAATACCCTCTGTAAT
ATAAATGCAAAACTTCTCGGAAAACGCTATCCAATTGAATCCATTTTCAA
ATCATAATACACTGTGACCACATGAAATTTACCACAGACCGGAAGAGTGT
CTGAATACATTAGAGTCTATATAAGGCAGCACAGAATGACGGGCGTGGGA
GGATCACATGATCACCTTAATTGATGCAGTGAATAATTTGATCTAAATTC
AATAGCCTTTCAAGGCTCAGAAAGCTATGAAGAAATGGAATCTTCCTCTG
AATGGGAATATGCACTCATGAGGAACGCACAGTAAGTGACCTCATTGCTG
CAGGTCTGAAAGCCTTTCTTTCCTCCTAAAGCAAGAAGGAGAACACGAAC
AAGACAAGGTCTCCCTCTTTTGTCTCTTCAACATTGTTCTCAAAATCCTT
GGTTGGTTGGTTAGTGGCTTGTGGTTGTTGCTTCGCTTTACCCCCCTCCT
CTCCTCTTTCTTTTTCTCTTTCCCCTCCCCCCTTTTCTCCCTCCTTTCCT
GTTTTTCCCCTCCCTCCCTCCCTCTTTTTTTTCTCTTTTCCTCCCCCTCC
CCCTCTTTTTTTCCCCTCTCTTTCTTTATCCCCATTTCTCTTTTATTACT
TCCCCCCTTTATCTCTCTTCTACTTCCCCCTTTTCCTTTTCCCC
CGATGCTGTGGGTGGCCTGGNGGCTGCCTGTTTTCAAAATGGGGGTGAAC
TATAGAAGTACCAAAAGAAAGCCTTGNCCCAGCTATGATGGCCTGCCCCA
TATGGTGCCTACTATGAAAAAACTCTATACAGGCTCAGAGAAGACAGTGG
GGAAGCAGCAAGTGCCTTCCATACTTTCTCAGAGTGACCATTTAGTGGAA
AGGCAAATAGCAAATACTTAGGAATATAATGATTATTTTAAAGGAGATAT
TCAAAATCCAGTGGGATGTGGAAACAGGAGGCCTCAACCTCAGTCTTAAA
AGGAGGAAAGATTTCNCTGATGGTGTGATTTTCTAGCTGAGAGCTAAGCT
ATAGATGATCCTATGCAGTGGGCAGGGAGTACGAAGGCCTCCCAGGCAGG
AGAAGGCAAGATATTTTTAGAGAGGGAGCTCTGAGACCATGCGGATCCAC
ACTGGCTCTGAACAAGGGAGTGGATTAAGTAGGGGCTGACAGCAGTTTCA
TAAAGATCAGCTTGTCTGACCTACTAAGAAACGATAAGAAGACAGAAGAG
ACCAATGTGCCAGATGTTGTTAACGACATTTCTAGCAAGATCTTTTACCC
ACTGAGCTATCTCGATGTCCCTAAAGAAAAGCATTCTAATTGGTCCGAAC
TCGTTAAGAGTTATGTGATTAGAAGGGGTGATAGTAGCTTGGCTCATAAT
TGTAGCAGAGGACATGAAAGGAAGTACGTGTGATGGCTGTTTAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_n10.g1 MSMg01no502_n10.g1 CHROMAT_FILE:
MSMg01no502_n10.g1 PHD_FILE: MSMg01no502_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:58 2005
         (244 letters)



>mm_chr7_107022435_107023078
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgattttctagctgagagctaagctatagatgatcctatgcagtgggcagggagtacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtgattttctagctgagagctaagctatagatgatcctatgcagtgggcagggagtacg 385

                                                                       
Query: 61  aaggcctcccaggcaggagaaggcaagatatttttagagagggagctctgagaccatgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggcctcccaggcaggagaaggcaagatatttttagagagggagctctgagaccatgcg 325

                                                                       
Query: 121 gatccacactggctctgaacaagggagtggattaagtaggggctgacagcagtttcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatccacactggctctgaacaagggagtggattaagtaggggctgacagcagtttcataa 265

                                                                       
Query: 181 agatcagcttgtctgacctactaagaaacgataagaagacagaagagaccaatgtgccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agatcagcttgtctgacctactaagaaacgataagaagacagaagagaccaatgtgccag 205

               
Query: 241 atgt 244
           ||||
Sbjct: 204 atgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)