Query= MSMg01no502_p23.b1 MSMg01no502_p23.b1 CHROMAT_FILE:
MSMg01no502_p23.b1 PHD_FILE: MSMg01no502_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:09 2005
(560 letters)
>mm_chr7_80114616_80115575
Length = 960
Score = 971 bits (502), Expect = 0.0
Identities = 544/562 (96%), Gaps = 10/562 (1%)
Strand = Plus / Plus
Query: 5 gaattctaaaaac---tttacatgctttctatgccaggcaaagagtaagctgtggtggtt 61
||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctaaaaaccaatata--tgctttctatgccaggcaaagagtaagctgtggtggtt 260
Query: 62 tgaatgaaaatggccttcataggctcatagaaagtggcactattcggagatgtgaccttg 121
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tgaatgaaaatggccttcataggctcatagaaagtggcactatttggagatgtgaccttg 320
Query: 122 ttggaagacatgtgtcactggaggtgggctttgaggcttcaaatgatcaagccatgccca 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcgaagacatgtgtcactggaggtgggctttgaggcttcaaatgatcaagccatgccca 380
Query: 182 gaggcactctctcttcctgctgcctgcaggagctgggtgtagacctctcagctactctcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggcactctctcttcctgctgcctgcaggagctgggtgtagacctctcagctactctcc 440
Query: 242 agtgccacggctgcctgcacat---cccatgtttccccccacaatgacaatgaactaaat 298
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgccacggctgcctgca--tgcccccatgtttccccccacaatgacaatgaactaaat 498
Query: 299 ctctaaactgtaagaaatctcttaaataaatatttctataagagttgccatgctcatagt 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctctaacctgtaagaaatctcttaaataaatatttctataagagttgccatgctcatagt 558
Query: 359 gtctcttcacagaaataagaccttaactacaacagcagccgttgacaaagagcaggtaag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtctcttcacagaaataagaccttaactacaacagcagccgttgacaaagagcaggtaag 618
Query: 419 tgggaaagataattcagaatccatcaaagtaggcaaagctgtcaagccgcactcggtaca 478
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 619 tgggaaagataattcagaattcatcaaagtaggcaaagctgtcaagctgcactcggtaca 678
Query: 479 gagagcagcaaagtcaggagagctatcattctgctttcctggagtcagaggtgcatccag 538
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 679 gagagcagcaaagtcaggagagctagcgttctgctttcctggagtcagaggtgcatccag 738
Query: 539 gagggagctgccttccttctga 560
||||||||||||||||||||||
Sbjct: 739 gagggagctgccttccttctga 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_p23.g1 MSMg01no502_p23.g1 CHROMAT_FILE:
MSMg01no502_p23.g1 PHD_FILE: MSMg01no502_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:09 2005
(516 letters)
>mm_chr7_80284414_80285329
Length = 916
Score = 990 bits (512), Expect = 0.0
Identities = 515/516 (99%)
Strand = Plus / Minus
Query: 1 cagagtggagcatccatgccttatgactagaccaaagaaaaggaagcgtgtccctgaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cagagtggagcatccatgccttatgactagaccaaagaaaaggaagcgtgtccctgaaaa 657
Query: 61 gccacagggctctgcccggacaacctttgtcttcaaagagacagcgtatgtcaagagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gccacagggctctgcccggacaacctttgtcttcaaagagacagcgtatgtcaagagtca 597
Query: 121 gggccacgacctaccataatgctgagtgctagctcacaagcattggtttctgcttataca 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gagccacgacctaccataatgctgagtgctagctcacaagcattggtttctgcttataca 537
Query: 181 acactgttcactgtccgagtgttttcagttttgcatataagtagccatttcaaatacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 acactgttcactgtccgagtgttttcagttttgcatataagtagccatttcaaatacaaa 477
Query: 241 agcaaagagaggcggctcctgggaggctgaatggctctggggaggacattagggtgtctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agcaaagagaggcggctcctgggaggctgaatggctctggggaggacattagggtgtctg 417
Query: 301 tgggtgtctctcctcaactagccagccctcctggtccccctcccagagctgttaagagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgggtgtctctcctcaactagccagccctcctggtccccctcccagagctgttaagagga 357
Query: 361 tctgagggaggcaacagtgtcgaccccgaagcatccagaggtgccttccttccgtctact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tctgagggaggcaacagtgtcgaccccgaagcatccagaggtgccttccttccgtctact 297
Query: 421 cccagcacactcttcctggtttcctagaggtcttcctgcatcttctgtcttgctgacaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cccagcacactcttcctggtttcctagaggtcttcctgcatcttctgtcttgctgacaga 237
Query: 481 taaaaagtaggcataggggtatgagaaggctacatc 516
||||||||||||||||||||||||||||||||||||
Sbjct: 236 taaaaagtaggcataggggtatgagaaggctacatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
