Query= MSMg01no503_i08.b1 MSMg01no503_i08.b1 CHROMAT_FILE:
MSMg01no503_i08.b1 PHD_FILE: MSMg01no503_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:49 2005
(569 letters)
>mm_chr7_116832430_116833398
Length = 969
Score = 971 bits (502), Expect = 0.0
Identities = 517/522 (99%)
Strand = Plus / Plus
Query: 5 tatgctgacttctgtttctctcaagagcagagggccctctatctcagaagtcttccattt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tatgctgacttctgtttctctcaagagcagagggccctctatctcagaagtcttccattt 264
Query: 65 cagaatgtgacagcaaaggctataactaccacctaagcccaaaacctcaaaaggagaaag 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagagtgtgacagcaaaggctataactaccacctaagcccaaaacctcaaaaggagaaag 324
Query: 125 atgtaagagacctatgttgttcataagaactaaggggttgcctggacactgtggtacatg 184
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 325 atgtaagagacctatgttgttcagaagaactaaggggttgcctggacactgtggtacaag 384
Query: 185 cttttaatcccagcactcaggaggaagtagcaagcaggtctctgtgaattcaagaccagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttttaatcccagcactcaggaggaagtagcaagcaggtctctgtgaattcaagaccagt 444
Query: 245 ctgctccaggacaaagcaagttccagcccagctaacagagaaactctgtcttaacacccg 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 ctgctccaggacaaagcaagttccagcacagctaacagagaaactctgtcttaacacccg 504
Query: 305 ccccccacacctctgtgtgtttgagtgtacatatacatcacacacacacatatgcacaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccccccacacctctgtgtgtttgagtgtacatatacatcacacacacacatatgcacaaa 564
Query: 365 tgtttatgtaggtcagaggacagcctactggaacctccttccacatgtgggtcctggaga 424
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 tgtttatgtaggtcagaggacagcctactggaacctcctcccacatgtgggtcctggaga 624
Query: 425 ctgaactcaggtcaccaggcttgcttggcagccaagtattttaccctggatgtagccctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgaactcaggtcaccaggcttgcttggcagccaagtattttaccctggatgtagccctg 684
Query: 485 gatgtcctggaactcaccctgccaggctggcctcaaactcag 526
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatgtcctggaactcaccctgccaggctggcctcaaactcag 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_i08.g1 MSMg01no503_i08.g1 CHROMAT_FILE:
MSMg01no503_i08.g1 PHD_FILE: MSMg01no503_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:49 2005
(480 letters)
>mm_chr7_116872848_116873726
Length = 879
Score = 874 bits (452), Expect = 0.0
Identities = 473/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 1 ctgacttgggaatttcctaactagtttcttctctcattaacattttcctttttgatagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgacttgggaatttcctaactagtttcttctctcattaacattttcctttttgatagaa 620
Query: 61 ttctggctcctgtttaatcttccagagacatttgtcttgtgttagttattgtgggtcatt 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttctggctcctgtttcatcttccagagacatttgtcttgtgttagttattgtgggtcatt 560
Query: 121 tggtcagtaatttggactctcccatttcccgttcctccgttttagtttttagttggcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tggtcagtaatttggactctcccatttcccgttcctccgttttagtttttagttggcacc 500
Query: 181 atatcaatttatcctctccagactctttagcacacatctttccaggcacttactctgttt 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atatcaacttatcctctccagactctttagcacacatctttccaggcacttactctgttt 440
Query: 241 cctgttctgtgccactgtgacttcttacaaccccttcctccttcacccaaagtccagtcc 300
|| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccag-ccagtgccactgtgacttcttacaaccccttcctccttcacccaaagtccagtcc 381
Query: 301 cccagcacccctgtggcctcccagcccctacagcccccacagccctttctgattcttatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cccagcacccctgtggcctcccagcccctacagcccccacagccctttctgattcttatc 321
Query: 361 tttttagaggccatacgctggccttttcacagatggaaacacactagaatctggtcttaa 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttcagaggccatacgctggccttttcacagatggaaacacactagaatctggtcttaa 261
Query: 421 agcctgttctttccctcacgtggtctgtagggttcctgctgtgctcaggtaaagaagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcctgttctttccctcacgtggtctgtagggttcctgctgtgctcaggtaaagaagatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 879
Length adjustment: 10
Effective length of query: 470
Effective length of database: 869
Effective search space: 408430
Effective search space used: 408430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
