Query= MSMg01no503_j04.b1 MSMg01no503_j04.b1 CHROMAT_FILE:
MSMg01no503_j04.b1 PHD_FILE: MSMg01no503_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:53 2005
(580 letters)
>mm_chr7_76755587_76756567
Length = 981
Score = 845 bits (437), Expect = 0.0
Identities = 522/581 (89%), Gaps = 53/581 (9%)
Strand = Plus / Plus
Query: 1 ataatgatataagaatgaatatttgtggatgatgaattaatattaatctatcacaaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatgatataagaatgaatatttgtggatgatgaattaatattaatctatcacaaatat 260
Query: 61 ttattggattagtatgaaaatcataaaaatattaacagaattttagagaaatatgaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattggattagtatgaaaatcataaaaatattaacagaattttagagaaatatgaacaa 320
Query: 121 atattctgagatattttgaaac----ataaaatattatgtgaagtaaacatattgcagtt 176
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct: 321 atattctgagatattttgaaacatatataaaata-ta--tgaagtaaacatattgcagtt 377
Query: 177 acatacttaggagttaatatatatatatatccatgtatatatgcatatatatgttatata 236
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acatacttaggagtta--atatatatatatccatgtatatatgcatatatatgttatata 435
Query: 237 tattgttataatatacagatcatgttatatatatgatgtatgtatattatttccacactg 296
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 436 tattgttataatatacagatcatgttatatatatgatgtatgt-----------aca--- 481
Query: 297 tcaattttatggcttctggcctctttttctttagttatttttatatagattattatatat 356
|||| ||||||||||||||||||||||||||
Sbjct: 482 ------ttat------------------------ttatttttatatagattattatatat 511
Query: 357 cttctagtatatacatgatatatgatatgtgacagatgacacatgacatgttacatgtta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cttctagtatatacatgatatatgatatgtgacagatgacacatgacatgttacatgtta 571
Query: 417 tattttatacattaaaattgtacataatatactgtcttacagggttttactgctatggac 476
||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct: 572 tattttatacattaaaattgtacataatatactgtctaacagggttttactgctgtgaac 631
Query: 477 agacaccatgaccaatgcaagtcttataaaaaacaaaattgaattggggctggcttacag 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agacaccatgaccaaggcaagtcttataaaaaacaaaattgaattggggctggcttacag 691
Query: 537 gttcagaggttcagtccattatcatcaaggtgggagcatgg 577
|||||||||||||||||||||| |||||| |||||||||||
Sbjct: 692 gttcagaggttcagtccattataatcaagttgggagcatgg 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_j04.g1 MSMg01no503_j04.g1 CHROMAT_FILE:
MSMg01no503_j04.g1 PHD_FILE: MSMg01no503_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:53 2005
(630 letters)
>mm_chr7_76594005_76595031
Length = 1027
Score = 982 bits (508), Expect = 0.0
Identities = 588/624 (94%), Gaps = 18/624 (2%)
Strand = Plus / Plus
Query: 5 aaaatatatcattctcaaagaaacagagcagacaaatagttggcctggagttagaggggt 64
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 aaaa-atatcattctcaaagaaacagagcagacaaatagttggcctggagttagagaggt 263
Query: 65 gcctgtactttgtaagaaatggaaagaagctgaaaggaagcaaactttcaaattcactta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcctgtactttgtaagaaatggaaagaagctgaaaggaagcaaactttcaaattcactta 323
Query: 125 cagagtgatgacttttcttaaagacaacatagtgtacaatttgttatttgtgaagaaaga 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagtgctgacttttcttaaagacaacatagtgtacaatttgttatttgtgaagaaaga 383
Query: 185 agatcttgtctatccagctacactcacacacaaaagaaagctgtacatagttgaggacat 244
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 384 agatcttgtctatccagctacactcacacacaaaagaaaactgtacatggttgaggacat 443
Query: 245 atacttaactttatacagataataatttcctaatattatcacaccagaacttcattatgt 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataattaactttatacagataataatttcctaatattatcacaccagaacttcattatgt 503
Query: 305 gtgatttgaatatatgcagtatagttttaagtcgtacatctcaaaaaacctgaaaaatac 364
||||||||||||||| |||||||||||||| || || ||||||| ||||||||||||||
Sbjct: 504 gtgatttgaatatatacagtatagttttaactcttatatctcaacaaacctgaaaaatat 563
Query: 365 gtgaatatagtttgaaccagaataaatagatacacagctaattataattatgcgacgcaa 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 564 gtgaatatagtttgaaccagaataaatagatacacagctaatcataattatgcgatgcaa 623
Query: 425 tgaattaagtattttggagaaattacttagtgtttacattacaaacaaggacacatttaa 484
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 624 tgaattaagtattttggagaaataacttagtgtttacattacaaacaaggaaacatttaa 683
Query: 485 aatcaatagcctaagttccaacttagcaaacaagacaaggaaaaacaaagtcaaggaaaa 544
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct: 684 aatcaatagcctaagttccaacttaggaaacaagacaaggaaaa-cacagtcaag-aaaa 741
Query: 545 acaaagtcaaggaaatgcaagcatcatacagataacagcttaccaagtaaaagaagttta 604
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ---------------tgcaagcatcatacagataacagcttaccaagtaaaagaagttta 786
Query: 605 tgcaagccacacacctgacaagga 628
||||| ||||||||||||||||||
Sbjct: 787 tgcaaaccacacacctgacaagga 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1027
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1017
Effective search space: 630540
Effective search space used: 630540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
