BAC Information

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BAC

Clone NameMSMg01-503M16
Chromosome7 (Build37)
Map Location 74,811,543 - 74,812,059
singlet/doubletsinglet
Overlap geneTtc23
Upstream geneAsb7, Lins2, Lass3, Adamts17, Lysmd4, Mef2a, EG665304, Lrrc28
Downstream geneDmn, LOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800, EG384639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503M16.T7 (MSMg01no503_m16.b1)MSMg01-503M16.TJ (MSMg01no503_m16.g1)
ACCAG578824AG578825
length709716
length of high quality
(start - end)
517 (86 - 602)229 (331 - 559)
definitionCHROMAT_FILE: MSMg01no503_m16.b1 PHD_FILE: MSMg01no503_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:10 2005CHROMAT_FILE: MSMg01no503_m16.g1 PHD_FILE: MSMg01no503_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTACTAATCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACA
ACACCGGCGGATTCAGTCTATTACCCCAAACTGTGGGATGGAGACACCCA
CACCTAAGTTAAATCTCACTGGAAACACCGGCAATCAGACCTTCCCAGTG
GTGTGCCTCCTAGGTGATTCTAGACCCATTGAAAGGGACAAAAGGGACAA
TGCTCATTATCACAGCTACAGAGGACTGTTGAGCTGAGAGCTAGCTTTCC
CCAGGAGCCGATCACTGCAGGAGCCGATCACTGCAGGCTAGCTAGAATAC
CTAAGAGGTGGTCCGTGTCTGTTCTACCTGCCTAGTTTTCCTTCATCCCA
CTACATTCCCCACCACTAAAGTGTATGTACCTCTTAAAGGAGTTGCTGTT
TGCTTCTCGAAACCAGATGACCACTCTACCACCCCAGCAGGTGGTTGTTT
GAGTCTCTGGCACTTCCCGAGCGCTCAGCACATAGCAAGCGCTCAGGAAA
TACTTACTGGGTAGATCTACGCACAAGCAGCCCTCGTGGCTCTGGAGTTC
CAAGCTGTCTACCTGATAAACTCATTTTCTTTTTCTAACAGTACAAACAG
GCCATCCAGGAGCTTGTGCGCTGTGTGGTACTAACAAGAATTTGCTATGG
TGACTGGCACTGGAAACTATCGGATGCGTATGTTTATCTGGCTCACGGTT
ACCCGCCCG
TTTTTTCTTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTCCCCCGAAATTCACTCTGCAGATCAGA
CTGGCCTCAAACTCACAGAGACCCACCTGCCTCTTCCTTCCTAGTGCCAG
GCATACGGGGCTGTGCCACCATGCCTGGTCTGACAAAATGTGTTTTTAAT
GAAGCAAAAGAGTATACTCTGGTGTGGTCGCATAGGCCCATAATCCCAAC
ATCCAAACAGTGGAGACAGGAAGATTATTGCGAGTTTGAGGCTATCCTGG
GCTAAAGTGAGACCTTGTCTCATATATTATTGAATAAACAAACAACGAAA
TTCAGCATCAACATCATGGTCTTGTAAAAATACTGTTCCTGAGCCTTTTA
TCCCAGCATTTGGGAGGCAGGGAGCAGTGGGCAGGGGACAGGAGTATCTC
TGAATTTGAAGCCAGCATGGTCTATACTGAGTGAGTTGCAGGACAACCAG
GGCTACACAGAGAAACCTTGTCCAGAAAAACTAAAAATAAAAACTAAACT
AAACTTAAAAACTAACAAACAAACAAAGCAAACAAGCTAGAAAGAACGAC
TGACTATTCCTGAAGCCCATCTAGACTCCTGATCCCACAGACTTGGGCTT
CTGAGTTTGAACATTTCCCTCCACAGAGCCGTTGTGTTTACAAGCAGAGA
AACTTAGGGATGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_m16.b1 MSMg01no503_m16.b1 CHROMAT_FILE:
MSMg01no503_m16.b1 PHD_FILE: MSMg01no503_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:10 2005
         (517 letters)



>mm_chr7_74811343_74812259
          Length = 917

 Score =  915 bits (473), Expect = 0.0
 Identities = 506/517 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatggagacacccacacctaagttaaatctcactggaaacaccggcaatcagaccttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatggagacacccacacctaagttaaatctcactggaaacaccggcaatcagaccttcc 260

                                                                       
Query: 61  cagtggtgtgcctcctaggtgattctagacccattgaaagggacaaaagggacaatgctc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcggtgtgcctcctaggtgattctagacccattgaaagggacaaaagggacaatgctc 320

                                                                       
Query: 121 attatcacagctacagaggactgttgagctgagagctagctttccccaggagccgatcac 180
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 321 attatcacagctacagaggactgctgagctgagagctaactttccccaggagccgatcac 380

                                                                       
Query: 181 tgcaggagccgatcactgcaggctagctagaatacctaagaggtggtccgtgtctgttct 240
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 381 tgcaggagccgatcactgcaggctagctagaagacctcagaggtggtccgtgtctgttct 440

                                                                       
Query: 241 acctgcctagttttccttcatcccactacattccccaccactaaagtgtatgtacctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctgcctagttttccttcatcccactacattccccaccactaaagtgtatgtacctctt 500

                                                                       
Query: 301 aaaggagttgctgtttgcttctcgaaaccagatgaccactctaccaccccagcaggtggt 360
           ||| |||||||||||||||||||| |||||||||||||||||||  ||||||||||||||
Sbjct: 501 aaatgagttgctgtttgcttctcgcaaccagatgaccactctactgccccagcaggtggt 560

                                                                       
Query: 361 tgtttgagtctctggcacttcccgagcgctcagcacatagcaagcgctcaggaaatactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttgagtctctggcacttcccgagcgctcagcacatagcaagcgctcaggaaatactt 620

                                                                       
Query: 421 actgggtagatctacgcacaagcagccctcgtggctctggagttccaagctgtctacctg 480
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 actgggtagatctacacacaagcagccctcgtgactctggagttccaagctgtctacctg 680

                                                
Query: 481 ataaactcattttctttttctaacagtacaaacaggc 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaactcattttctttttctaacagtacaaacaggc 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)