BAC Information

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BAC

Clone NameMSMg01-503N16
Chromosome7 (Build37)
Map Location 52,363,156 - 52,363,678
singlet/doubletsinglet
Overlap genenone
Upstream geneKlk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt
Downstream geneRps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503N16.T7 (MSMg01no503_n16.b1)MSMg01-503N16.TJ (MSMg01no503_n16.g1)
ACCAG578872AG578873
length721710
length of high quality
(start - end)		493 (56 - 548)350 (74 - 423)
definitionCHROMAT_FILE: MSMg01no503_n16.b1 PHD_FILE: MSMg01no503_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:15 2005CHROMAT_FILE: MSMg01no503_n16.g1 PHD_FILE: MSMg01no503_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTTTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAG
AGGATCCGCGGAATTCACATACTTTACCGCAAGAACTTCCTGAGGCTGTG
CTCTGATATCCACACATTTGCCATGGCGTGGGTACACACGTTTCATAAAC
TGCAAATAAAGGTTTAATAAATTAATAAGTCTGGCACTGGTGGCGCACGC
CTTTAATCCCAGCACGCAGGAGGCAGACGCGGGCAGATTTCTGAGTTCGA
GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGTTACACAGA
GAAACCCTGTCTCAAAAAAACCAAAGGAAAAAAACCAAAACAAACCAAAA
AAAAAGAATAAGTGAGGTTGTGGAGAACAATGCAATGGCTGAGTGAGCAA
ACCTCTTGCTACCTTACAGCTCCTGGAGTCCACACGGGCACACACACACA
AGCACACAGGCATGCACATGCATACATATACACACATGGATAATAAGTAA
AATTAAATTTTAAAAAATGTGTAAGTGTCAAGTATGAATGTGTATGCTTA
GGATGTGTTCAGGGGATGTGACTCTTCATTCACACCTTCTGTGTGTGTGT
GTAGGGCGTGGAGGATCCACTGGGCGCCTTCTTTGATATCCATATTTTCC
TTTCTTCTTTAAGAACCATCTATTTTATATATGAAAAAGCTGTAGCTGTC
TTCCGACACATCACAATAGGG

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTGGAGACCAGATTAGCCTTGAAC
TCAGAAATCTGGCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGT
GCCACCACCATCCAGCCTGTGTTGAGATTTAAAAAAAACATTTTAAAAAA
ATGTATGTGTATGAATGTTCTGCCTGCATGCATGTAAGAGCGCTGTACGT
GTGTCTGTTGCCCAGGGAGACCAGAAGAGGGTGTCAGATCGTCCTGAAAC
TGGAGTTACAGGTTATTTTGAGCTGCTAAGTGGATTCTGGGAACCAAACC
TCGTCCTCTACAAAAGCAGCTACTGTCTTAGCTACCAAGCCTTTTCTCTT
TTTAAGTTACATTTATGTTTTAATGTGAGGTGGGGCACATGTATGCTACA
GTACTAATGATAAGACCAGAAGGCAACTTATTGACGCTCCCCTTTATTGA
CTGGATCTGGGCTCATATTCAAGCCCTCTCATCACCCCATATCTGCTTTC
TATAGCTTCTGCCTTACTGAACAGGGTTATAGGCTACACCTATCTAATGT
TCAAAAGCCTCAGCCCACCTTTGCTGGTGTTTGGGCTCATGAAAGCCTGA
CCTGGGAGATTGGGAGGTCGTCTTGTGAATGTGACCAGGACAAAATGATG
TCACTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_n16.b1 MSMg01no503_n16.b1 CHROMAT_FILE:
MSMg01no503_n16.b1 PHD_FILE: MSMg01no503_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:15 2005
         (493 letters)



>mm_chr7_52362821_52363716
          Length = 896

 Score =  708 bits (366), Expect = 0.0
 Identities = 469/528 (88%), Gaps = 44/528 (8%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcacatactttaccgcaagaacttcctgaggctgtgctctgatatccacacattt 64
           |||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ggaattcacatacagtaaggcaagaacttcctgaggctgtgctctgatatccacacattt 799

                                                                       
Query: 65  gccatggcgtgggtacacacgtttcata---------------aactgcaaataaaggtt 109
           |||||||||||||||||||| |||||||               |||||| ||||||||||
Sbjct: 798 gccatggcgtgggtacacacatttcataaacacacatagtaacaactgccaataaaggtt 739

                                                                       
Query: 110 taataaattaataagtctggcactggtggcgcacgcctttaatcccagcacgcaggaggc 169
           |||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct: 738 taataaattaataagtctggcagtggtggcgcacgcctttaatcccagcactcgggaggc 679

                                                                       
Query: 170 agacgcgggcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggaca 229
           ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaggcagacagatttctgagttcgaggccagcctggtctacaaagtgagttccaggaca 619

                                                                       
Query: 230 gccagggttacacagagaaaccctgtctcaaaaaaaccaaaggaaaaaaaccaaaacaaa 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gccagggttacacagagaaaccctgtctcaaaaaaaccaaaggaaaaaaaccaaaacaaa 559

                                                                       
Query: 290 ccaaaaaaaaa---gaataagtgaggttgtggagaacaatgcaatggctgagtgagcaaa 346
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccaaaaaaaaaaaagaataagtgaggttgtggagaacaatgcaatggctgagtgagcaaa 499

                                                                       
Query: 347 cctcttgctaccttacagctcctggagtccacacgggcacacacacaca-agcacaca-- 403
           |||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||  
Sbjct: 498 cctcttgctaccttacagctcctggagttcacacgggcacacacacacaca-cacacaca 440

                                                                       
Query: 404 ---------------g---gcatgcacatgcatacatatacacacatggataataagtaa 445
                          |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cacacacacacacacgcatgcatgcacatgcatacatatacacacatggataataagtaa 380

                                                           
Query: 446 aattaaattttaaaaaatgtgtaagtgtcaagtatgaatgtgtatgct 493
           ||||| ||||||||||||||||    |||||||| |||||||||||||
Sbjct: 379 aattacattttaaaaaatgtgt----gtcaagtacgaatgtgtatgct 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 896
Length adjustment: 10
Effective length of query: 483
Effective length of database: 886
Effective search space:   427938
Effective search space used:   427938
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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