BAC Information

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BAC

Clone NameMSMg01-503N17
Chromosome7 (Build37)
Map Location 135,838,027 - 135,838,624
singlet/doubletsinglet
Overlap geneInpp5f
Upstream geneBcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, LOC100043651
Downstream gene1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a, Brwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503N17.T7 (MSMg01no503_n17.b1)MSMg01-503N17.TJ (MSMg01no503_n17.g1)
ACCAG578874AG578875
length700712
length of high quality
(start - end)
602 (66 - 667)544 (92 - 635)
definitionCHROMAT_FILE: MSMg01no503_n17.b1 PHD_FILE: MSMg01no503_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:15 2005CHROMAT_FILE: MSMg01no503_n17.g1 PHD_FILE: MSMg01no503_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTACCCCTTNNNTTATCCCTCTATAAXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCAGAGGATCCGCGGAATTCCTTATTTTCCTAAGTCGGAGGAAG
ACAAGCAGCTAGCCAATTCTTTAGAGAGCGTAGGGCCAATAGATTACATT
CTCCCAAGCTGTGGGATTATTGTGTCAGCACCTCGATTAGGCAGTCGGTC
CCAGTCTGCCAGCAGTATCGACGTCAGCACTCATGCCCCCTCAGAAGCTG
CTGCTGGTCCTGGAAGTGAACTTGGGAAAGGCCTGGAGTCTCCCCTGAAG
AAAAGCCCTTCTGCTGACAGCATACACACACGGACTGGCTTCACAAAGCC
CATGGATGTTTACTGCCAGAGATTTGTGCAGGATGCACAGAACAAAATGA
ATGACCTGTCAGAGATCAGGTCTGTAGCTCAGAAGAGTGAGGAGGGAAGT
CACAAGACTAACCGTGTGTCTAATGAAGAAACCCAGTCAGAACCAATGGG
ACAGACGCCTCCTCGACCCTCTCAGTTAAACGTCTCTTGTTCTGTGGCAG
GCCCACCATTCTTATCAGTTGAACCAGTACATTCAGTGCTATCTCAGAAG
ACGCCCAGCTCCGGGTCCAGCCTTCTGGAACTTGAGGCAGGGCTCTGCGT
AACTCCCTCTTCAGAGAGCAGCAGCAGCAGGGCAGTCTCTCCCTTTTGTN

NTTTTTTTTTTTTTTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAA
GAATACCGAAAGGCTGAGAAACACCTGAAAAAATGTTCAACATCCTTAAT
CATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAG
TCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGA
TGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGT
ACAACCACTCTGGAAATCAGTCTGGCTGTTCCTCAGAAAATTGGACATAG
TACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGAT
GTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTT
ATTTATAATAGCCAGAAGCTGGAAAGAACCCAGGTGCCCCTCAACAGAGG
AATGGATACAAAAAAATGTGGTACATTTACACAATGGAATACTACTCAGC
TATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGTTAGACCTGG
AGGGCATCATCCTGAGTGAGGTTACCCAATCACAAAAGAACTCAAATGAA
ATGTACTCACTGATAAGTGGATATTAGCCCACAAACTTAGTATAGCGAGA
TATAAGGTACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_n17.b1 MSMg01no503_n17.b1 CHROMAT_FILE:
MSMg01no503_n17.b1 PHD_FILE: MSMg01no503_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:15 2005
         (602 letters)



>mm_chr7_135837823_135838824
          Length = 1002

 Score = 1120 bits (579), Expect = 0.0
 Identities = 593/601 (98%), Gaps = 7/601 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctta----ttttcctaagtcggaggaagacaagcagctagccaattctttagag 61
           ||||||||||    ||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttacaaatt---ctaagtcggaggaagacaagcagctagccaattctttagag 261

                                                                       
Query: 62  agcgtagggccaatagattacattctcccaagctgtgggattattgtgtcagcacctcga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agcgtagggccaatagattacattctcccaagctgtgggattattgtgtcagcacctcga 321

                                                                       
Query: 122 ttaggcagtcggtcccagtctgccagcagtatcgacgtcagcactcatgccccctcagaa 181
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaggcagtcggtctcagtctgccagcagtatcgacgtcagcactcatgccccctcagaa 381

                                                                       
Query: 182 gctgctgctggtcctggaagtgaacttgggaaaggcctggagtctcccctgaagaaaagc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gctgctgctggtcctggaagtgaacttgggaaaggcctggagtctcccctgaagaaaagc 441

                                                                       
Query: 242 ccttctgctgacagcatacacacacggactggcttcacaaagcccatggatgtttactgc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccttctgctgacagcatacacacacggactggcttcacaaagcccatggatgtttactgc 501

                                                                       
Query: 302 cagagatttgtgcaggatgcacagaacaaaatgaatgacctgtcagagatcaggtctgta 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cagagatttgtgcaggatgcacagaacaaaatgaatgacctgtcagagatcaggtctgta 561

                                                                       
Query: 362 gctcagaagagtgaggagggaagtcacaagactaaccgtgtgtctaatgaagaaacccag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gctcagaagagtgaggagggaagtcacaagactaaccgtgtgtctaatgaagaaacccag 621

                                                                       
Query: 422 tcagaaccaatgggacagacgcctcctcgaccctctcagttaaacgtctcttgttctgtg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcagaaccaatgggacagacgcctcctcgaccctctcagttaaacgtctcttgttctgtg 681

                                                                       
Query: 482 gcaggcccaccattcttatcagttgaaccagtacattcagtgctatctcagaagacgccc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gcaggcccaccattcttatcagttgaaccagtacattcagtgctatctcagaagacgccc 741

                                                                       
Query: 542 agctccgggtccagccttctggaacttgaggcagggctctgcgtaactccctcttcagag 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agctccgggtccagccttctggaacttgaggcagggctctgcgtaactccctcttcagag 801

            
Query: 602 a 602
           |
Sbjct: 802 a 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)