BAC Information

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BAC

Clone NameMSMg01-503O06
Chromosome7 (Build37)
Map Location 107,557,530 - 107,557,748
singlet/doubletsinglet
Overlap geneAU020772
Upstream geneGdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1
Downstream geneUcp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503O06.T7 (MSMg01no503_o06.b1)MSMg01-503O06.TJ (MSMg01no503_o06.g1)
ACCAG578900AG578901
length703750
length of high quality
(start - end)
32 (318 - 349)219 (87 - 305)
definitionCHROMAT_FILE: MSMg01no503_o06.b1 PHD_FILE: MSMg01no503_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:18 2005CHROMAT_FILE: MSMg01no503_o06.g1 PHD_FILE: MSMg01no503_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTACAAAACCAAAAATTGCGGGGCCAAAAGATTACTACTACTNCACCAG
CCGGAANNCCNNCTTTACCNGAGNAGGGGGNANNNGNAGNNNNNGANAGN
GGANNGNANNANNATTNCCCACAACGAAGCCGNNCNGCNNNANGAAGCAC
GGANAGACGAAGGNCCACGGACNCAAACAGGGCGGAAGACAGCGGGGACC
CCAACNCACACANAACGGGNCGCCCAGCAGCGAAGACAGGCTTTAGAGAG
CACCAACCCCGCAGCNGAAACCCCGAACAGCGCGGANAGGGGCGCAGAAG
AACGCATTTTTTTTTGTGCAGCCCCACAAGGCACCAAAGATGCACACAGC
ATCTACTAGGCCCCCGCAGGCTGGCAAGTAGGTCTTACAGAATAGGAAAG
GCGATACAGTAACTGGTCCTGGGCTATAAAGACCGGTCCTTAACATGTTT
AGTTAGGGAACCTCATATGTGGGTTGGGAAAAGCCACCAATTATGGGAAA
ATGCAGCAAAATCTCTCTGTCTCATTCAGTGCCGACCGTTAGGTCTGGTC
AGTAGTGAACACTTCCAAAATTGTCAACGTATGAGATAGATTGACGGCTT
GAATTAATGAAACAGTGTAACCGCCTATATTTTGCTTTTTAAGCACTGCT
TCTACGTCTGTATTAGGGTTTTAGTAATAGATCAGGCAACTAGTAACGCC
CTT
TTATTTATTACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGTACATAAGA
ACTAATACTGTACCCAGAGTATCTTTCCATCTGTCTCCTCGGTTGACCTT
CCTGCCACCCCAAAGAGCTGTAAGTGTTATCTTCCTTTTCCCAGTTATCA
CGGCCAGAGAAATTGATTTCATGTCAGTTATGGTGACTTAGTTTTCTGGG
CACAGGCCTTTTGACCTGTGTATGGATCCAGATAGCAAGATCCATATCCT
GCCTAATAGCAACAAAAAGATTATATTCAAGAATTAAGATTGTGCCGGGC
AGCGGTGGCACACACCTTTAATCCCTTCACTCGGGAAGCATAGGCAGGTG
TATTTCTGAGCTCGAGGCCAGCCTGGCCTACACTGTGAGTTCCAGGACAG
TCTGGGTTACACAGAGAAACCCTGCCTCGTTTAATCTTTACTTAATTTTT
CCTCCCCCCCCCCAGAATTATTATTGTCCTATATCATACTAATATCTCTG
TTACAGGTGATCCCCCACGTTGATTCGACCATTCCCCTGCCCTTATTCTT
CCTTTTAACCCCGGTGCCGGCTTTTGTTTTCTCGCCTAACCATCCTATAT
TATGCTTTATTAATTCGATTTGTATCCAACCCTTATCTCACCTTTATCGG
CTTTGACTAAAACGGGAATCTATTAAATAGGGACGCGTGCATTCTCTCTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_o06.g1 MSMg01no503_o06.g1 CHROMAT_FILE:
MSMg01no503_o06.g1 PHD_FILE: MSMg01no503_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:18 2005
         (219 letters)



>mm_chr7_107557330_107557948
          Length = 619

 Score =  408 bits (211), Expect = e-118
 Identities = 217/219 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttgtacataagaactaatactgtacccagagtatctttccatctgtctcctcggttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttgtacataagaactaatactgtacccagagtatctttccatctgtctcctcggttga 260

                                                                       
Query: 61  ccttcctgccaccccaaagagctgtaagtgttatcttccttttcccagttatcacggcca 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttcctgccgccccaaagagctgtaagtgttatcttccttttcccagttatcacggcca 320

                                                                       
Query: 121 gagaaattgatttcatgtcagttatggtgacttagttttctgggcacaggccttttgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaattgatttcatgtcagttatggtgacttagttttctgggcacaggccttttgacc 380

                                                  
Query: 181 tgtgtatggatccagatagcaagatccatatcctgccta 219
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tgtgtatggatccagatagcaagacccatatcctgccta 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)