Query= MSMg01no504_c06.b1 MSMg01no504_c06.b1 CHROMAT_FILE:
MSMg01no504_c06.b1 PHD_FILE: MSMg01no504_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:39 2005
(615 letters)
>mm_chr7_117689923_117690938
Length = 1016
Score = 1139 bits (589), Expect = 0.0
Identities = 610/617 (98%), Gaps = 2/617 (0%)
Strand = Plus / Plus
Query: 1 tgattatcagagctcagaaatatgtggaaaagccatcaatgtccagtgaaattcaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgattatcagagctcagaaatatgtggaaaagccatcaatgtccagtgaaattcaaataa 260
Query: 61 tggaaaacacacttgattaaaaaatgaatagcttaaccactcagattttttgacaggtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaaaacacacttgattaaaaaatgaatagcttaaccactcagattttttgacaggtta 320
Query: 121 tttctggttctaaactaagtacatagct-taaactgaaggaaatactaaggttgtactac 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tttctggttctaaactaagtacatagctctaaactgaaggaaatactaaggttgtactac 380
Query: 180 cccttagggaagtctttcagtcagttataatctcaattgtaaaatctaacttgtttattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccttagggaagtctttcagtcagttataatctcaattgtaaaatctaacttgtttattt 440
Query: 240 agagccctactggtgccataattccccagtccacaaaccctatggatagcatttgtaaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagccctactggtgccataattccccagtccacaaaccctatggatagcatttgtaaat 500
Query: 300 gaggtctatcttggacaataaaaataactaggaaccaccaactctgtaaatatctcatta 359
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 gaggtctatcttagacaataaaaataacttggaaccaccaactctgtaaatatctcatta 560
Query: 360 gtcttcaaagtttaataataaaatgcttccctactactgtttttattattatttattatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcttcaaagtttaataataaaatgcttccctactactgtttttattattatttattatt 620
Query: 420 ttatgtgtatgggtgtactatctatatgtatgt-tatgtattatgtacctatctggtgcc 478
| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 621 tgatgtgtatgggtgtactatctatatgtatgtctatgtattatgtagctatctggtgcc 680
Query: 479 cacagaatctggaagagggtgtcagatgctcagaaactaaagttccagtagctgtgagcc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacagaatctggaagagggtgtcagatgctcagaaactaaagttccagtagctgtgagcc 740
Query: 539 accatgtggtactaggggccaaactgggattctctgaagagtaataagcagccagtgatc 598
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accatgtggtactaggagccaaactgggattctctgaagagtaataagcagccagtgatc 800
Query: 599 ctactattgtctctcta 615
|||||||||||||||||
Sbjct: 801 ctactattgtctctcta 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_c06.g1 MSMg01no504_c06.g1 CHROMAT_FILE:
MSMg01no504_c06.g1 PHD_FILE: MSMg01no504_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:39 2005
(531 letters)
>mm_chr7_117861750_117862680
Length = 931
Score = 988 bits (511), Expect = 0.0
Identities = 526/531 (99%)
Strand = Plus / Minus
Query: 1 cattgaacattcacacatacgtgcacacgtgcacatgtttctttatccagtcatctgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cattgaacattcacacatacgtgcacacgtgcacatgtttctttatccagtcatctgcgg 746
Query: 61 atggacactcaagtagtggtcacgggcatgcaagtgtcattgtgaggtgatgacttcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atggacactcaagtagtggtcacgggcatgcaagtgtcattgtgaggtgatgacttcact 686
Query: 121 ccttccctgtgggaaatctctgctaattaagtacagtcaagagacaagcccaggagcaga 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccctccctgtgggaaatctctgctaattaagtacagtcaagagacaagcccaggagcaga 626
Query: 181 ggacagcagggaggaagtgttctctctggaaagtcacggaaggtgggaagcctgcagggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggacagcagggaggaagtgttctctctggaaagtcacggaaggtgggaagcctgcagggc 566
Query: 241 attctcagtgtgtgtgggcccaggacaaggtcaccaaaaggaaccagctgcgagcaactc 300
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agccccagtgtgtgtgggcccaggacaaggtcaccaaaaggaaccagctgcgagcaactc 506
Query: 301 tctttatgagtgcagcctccaggctaccctcctacttccctgttcccgcttagcctgccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctttatgagtgcagcctccaggctaccctcctacttccctgttcccgcttagcctgccc 446
Query: 361 ttgagctctgggtgaccttcaggtcctgcttgtccccagtcctctgtgcacagcagcccg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgagctctgggtgaccttcaggtcctgcttgtccccagtcctctgtgcacagcagcccg 386
Query: 421 gcactctctaacttccctgacttccattccctatgggtaatgacttctactctgaaggat 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 gcactctctaacttccctgacttccattctctatgggtaatgacttctactctgaaggat 326
Query: 481 gtgggctggaagttgttgatcggggccatactaggggtcaagccggaacca 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgggctggaagttgttgatcggggccatactaggggtcaagccggaacca 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
