BAC Information

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BAC

Clone NameMSMg01-504D20
Chromosome7 (Build37)
Map Location 76,769,500 - 76,769,829
singlet/doubletsinglet
Overlap geneEG665410
Upstream geneArrdc4, LOC384741
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504D20.T7 (MSMg01no504_d20.b1)MSMg01-504D20.TJ (MSMg01no504_d20.g1)
ACCAG579166AG579167
length762739
length of high quality
(start - end)
669 (47 - 715)382 (62 - 443)
definitionCHROMAT_FILE: MSMg01no504_d20.b1 PHD_FILE: MSMg01no504_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:47 2005CHROMAT_FILE: MSMg01no504_d20.g1 PHD_FILE: MSMg01no504_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCCTGAATTTCCAGCAACGGCTTGTGCTGTGAGATTGAGAATCGAT
AAATGGGACCTCATAAAGTTGCAAAGCTTCTGCAAGGCAAAAGACACCGC
CAATATGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATC
CTAAATCAGATAAGGGACTAATATCCAATATATATAAAAAACTCAAAAAG
GTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCT
AAACAAAGAATTCTCACCTGAGGAATACCAAATGACCGAGAAGCACCTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACTTCACACCAGTCAGAATGGCTAAGATGAAAAATTCAGG
TGACAGCAGATGCTGGCCTGGATGTGGAGAAAGAGAAACACTCCTCCATT
GTTGGTGGGATTGAAAGCTTATACAACCACTCTGGAAATCAGTCTGGCAG
TTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCTGCAATACCTCT
CCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAGGATACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTAGTACATTTA
CACAACAGAGTN
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTTCTGGGCACTTCTAAGCATGCAACAAATTACTATGT
TGTTCTCATTCCATAGTTCCCTCTGGACATCTGCTGATGAACACAAGGGA
TTAGGCAAGGGTGACCTCACTATGTTTAAACAGTTCTCCTGGGCTTCCCT
TTGAAATAGTGATTGTGAGCACAAAGGCCATGGAGGGATGACGTTGGGTT
GAGATTCTGGATGCATGTTGAAAATTGATGGGAGGAGAGGCCCTTGGTCC
TGATGTTATGAGGAGCCCTTGGTCCTGATGGGAGGAGAAGCCCTTGGTCC
TGTGAAGGCTCTAAGTCCCAGTGTAGGGGAATGCCAGGGCCAGGAAGCTG
GAGTGGGTGGGTTGGTGAGCAGGGGGAGGGAGGAGGAGATANNNNNNNNT
NNNNNNTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTTT
TTTTTTTTTTTTTTTTNTTTTTTTTTTTNNTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTNTNNTTTTNTCTCTTTTNTTTTTTTTTTTCTTTTTTTTTT
TTTTTCTTTCTTCCTTTTTTCTTCCCCCTTTCCCTTTTCTTTCTTTCTCG
TCTTTCTCCCGCCCCTCTTCTTTGTCGTTTTTGCCTTTCTTGTTTTTTTT
GCTTGTCTGTCGCTTTCCTTTTTTGTTTCTCTCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_d20.g1 MSMg01no504_d20.g1 CHROMAT_FILE:
MSMg01no504_d20.g1 PHD_FILE: MSMg01no504_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:47 2005
         (382 letters)



>mm_chr7_76769300_76770081
          Length = 782

 Score =  514 bits (266), Expect = e-150
 Identities = 327/380 (86%), Gaps = 50/380 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctgggcacttctaagcatgcaacaaattactatgttgttctcattccatagttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttctgggcacttctaagcatgcaacaaattactatgttgttctcattccatagttccc 260

                                                                       
Query: 61  tctggacatctgctgatgaacacaagggattaggcaagggtgacctcactatgtttaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctggacatctgctgatgaacacaagggattaggcaagggtgacctcactatgtttaaac 320

                                                                       
Query: 121 agttctcctgggcttccctttgaaatagtgattgtgagcacaaaggccatggagggatga 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 agttctcctgggcttccctttgaaatagtgattgtgagcataaaggccatggagggatga 380

                                                                       
Query: 181 cgttgggttgagattctggatgcatgttgaaaattgatgggaggagaggcccttggtcct 240
           |||||||| ||||||||||||||||||||||||||||||||||||||             
Sbjct: 381 cgttgggtcgagattctggatgcatgttgaaaattgatgggaggaga------------- 427

                                                                       
Query: 241 gatgttatgaggagcccttggtcctgatgggaggagaagcccttggtcctgtgaaggctc 300
                                                |||||||||||||||||||||||
Sbjct: 428 -------------------------------------agcccttggtcctgtgaaggctc 450

                                                                       
Query: 301 taagtcccagtgtaggggaatgccagggccaggaagctggagtgggtgggttggtgagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 taagtcccagtgtaggggaatgccagggccaggaagctggagtgggtgggttggtgagca 510

                               
Query: 361 gggggagggaggaggagata 380
           ||||||||| ||||||||||
Sbjct: 511 gggggaggggggaggagata 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)