Query= MSMg01no504_e21.b1 MSMg01no504_e21.b1 CHROMAT_FILE:
MSMg01no504_e21.b1 PHD_FILE: MSMg01no504_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:52 2005
(577 letters)
>mm_chr7_122919220_122920196
Length = 977
Score = 1087 bits (562), Expect = 0.0
Identities = 571/574 (99%), Gaps = 2/574 (0%)
Strand = Plus / Plus
Query: 5 gaattctaaaggtatgtaactaaagagaaataatggtaaagttgattatccaatcacctc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaaggtctgtaactaaagagaaataatggtaaagttgattatccaatcacctc 264
Query: 65 agtggtctccagaggcatcagtacatggaaacacagtggaattattaacatttataatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtggtctccagaggcatcagtacatggaaacacagtggaattattaacatttataatgt 324
Query: 125 gatcaccttcagaaacatctcagatccacatagtttgcagtttataagagactttcatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatcaccttcagaaacatctcagatccacatagtttgcagtttataagagactttcatat 384
Query: 185 tcattgtttgggttatttctcaaaatatttcaattgccatgttaaatacaaagaccacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcattgtttgggttatttctcaaaatatttcaattgccatgttaaatacaaagaccacag 444
Query: 245 caacttttgaatcctgtggtttggaaaaactgagtgtatcagacagggctacagttccta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caacttttgaatcctgtggtttggaaaaactgagtgtatcagacagggctacagttccta 504
Query: 305 agttactgctgggtagcctggatcatcaaaagcatcaactacgtgccagcaatctgatta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agttactgctgggtagcctggatcatcaaaagcatcaactacgtgccagcaatctgatta 564
Query: 365 gcatgacaagaacgtgagcaagactctttagtcagacttccacaaacatcaataaaagac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcatgacaagaacgtgagcaagactctttagtcagacttccacaaacatcaataaaagac 624
Query: 425 gaacattaagtctttataagaataaattcaattagacgggaactacctgtcagtcaaagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaacattaagtctttataagaataaattcaattagacgggaactacctgtcagtcaaagt 684
Query: 485 cccctagagtgtcactaaggtctaaatctcaaaaactga-tgaaaaatccagggctaggt 543
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 685 cccctagagtgtcactaaggtctaaatctcaaaaact-agtgaaaaatccagggctaggt 743
Query: 544 cagggctgaagcacacagataaagaactcatgta 577
||||||||||||||||||||||||||||||||||
Sbjct: 744 cagggctgaagcacacagataaagaactcatgta 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_e21.g1 MSMg01no504_e21.g1 CHROMAT_FILE:
MSMg01no504_e21.g1 PHD_FILE: MSMg01no504_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:52 2005
(518 letters)
>mm_chr7_123086303_123087221
Length = 919
Score = 949 bits (491), Expect = 0.0
Identities = 512/519 (98%), Gaps = 1/519 (0%)
Strand = Plus / Minus
Query: 1 aaagagcagtctgtgcagggagattgatgctaaggagccagattcattggtgaatataga 60
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aaagagcggtttgtgcagggagattgatgctaaggagccagattcattggtgaatataga 660
Query: 61 atggacaccgaaatggtggtgttctcccttttccccctcccccaagtatcttttatactt 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 659 atggacaccgaaatggtggtgttctccctttttcccctcccccaagtatcttttatactt 600
Query: 121 tcaaccatattttggagaaaaaaacccctattttctcaag-aaaaaaagatgaattaaaa 179
|||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 599 tcaaccttattttggagaaaaaaaaccctattttctcaagaaaaaaaagatgaattaaaa 540
Query: 180 tactttcacgcatatttgttatacagaagaagccataagtacatggtagctattaaaaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tactttcacgcatatttgttatacagaagaagccataagtacatggtagctattaaaaca 480
Query: 240 agtctgcataaatctacttttaagcaaccagaatttgctgccattttacactgttgcaaa 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 479 agtctgcataaatctacttttaagcaaccagagtttgctgccattttacactgttgcaaa 420
Query: 300 gcattggtgtttaaggatgtgtctctttacagttgacaatagtaaaaaatataagaaaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcattggtgtttaaggatgtgtctctttacagttgacaatagtaaaaaatataagaaaca 360
Query: 360 tcttttgttgttgtaaagaatatactttttaggaaagtatttgaagaaatgtcaaaaatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcttttgttgttgtaaagaatatactttttaggaaagtatttgaagaaatgtcaaaaatt 300
Query: 420 agagtttaagcagaaagcactgaaaatgtatctaaaagtcagctttatctgtcagtggga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agagtttaagcagaaagcactgaaaatgtatctaaaagtcagctttatctgtcagtggga 240
Query: 480 ctgttgatcaggactaaccaagcaaatagatacgaatat 518
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctgttgatcaggactaaccaagcaaatagatacgaatat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space: 461772
Effective search space used: 461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
