Query= MSMg01no504_i17.b1 MSMg01no504_i17.b1 CHROMAT_FILE:
MSMg01no504_i17.b1 PHD_FILE: MSMg01no504_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:11 2005
(593 letters)
>mm_chr7_121394167_121395159
Length = 993
Score = 1085 bits (561), Expect = 0.0
Identities = 582/589 (98%), Gaps = 2/589 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaagtat-tacatggcccttatatactttaaaggagcagagcatgagttttca 62
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaagtacata-atggcccttatatactttaaaggagcagagcatgagttttca 262
Query: 63 aacttcaaacatatatgtttcttttgcaaaaatgttttcaagatgaaaatataaacatgt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aacttcaaacatatatgtttcttttgcaaaaatgttttcaagatgaaaatataaacatgt 322
Query: 123 aggggatgttcatgtttacttttgtattaacttcatttgtttgcttataccgacttatta 182
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 323 aggggatgttcatgtttacttttgtattaacttcatttgtttgcttatactgacttatta 382
Query: 183 cctacagaaaattgccagatatatttaagtatcatacattaaactatgcaagaaattata 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cctacagaaaattgccagatatatttaagtatcatacattaaactatgcaagaaattata 442
Query: 243 gtgttttgaagaacaagtaattaaatgattttatttctttagctttattaggctgggcta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtgttttgaagaacaagtaattaaatgattttatttctttagctttattaggctgggcta 502
Query: 303 ttatcctatttctataaaccaattctacaagtctaaagggaaaaaaaattcctttttctt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttatcctatttctataaaccaattctacaagtctaaagggaaaaaaaattcctttttctt 562
Query: 363 aagataaaaggtctactaaagacattctcaaaaattctagaggggaggctggagatcaat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagataaaaggtctactaaagacattctcaaaaattctagaggggaggctggagatcaat 622
Query: 423 ggcttacaggttaaggtacgtaaaaaaaagtcctgagctctgtccctaacccccacgtcg 482
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 623 ggcttacaggttaaggtacgtaaaaaaaagtcccgagctctgtccctaacccccacatcg 682
Query: 483 gacagcacacaaccaccaagaactccagttccaggggattagacataccttcttcttacc 542
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggcagcacacaaccaccaagaactccagttccaggggattagacataccttcttcttacc 742
Query: 543 gagaggacctgcactaatgtacacatattcacatacaagcatacataac 591
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gagaggacctgcactaatgtacacatattcacatacaagcatacataac 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_i17.g1 MSMg01no504_i17.g1 CHROMAT_FILE:
MSMg01no504_i17.g1 PHD_FILE: MSMg01no504_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:11 2005
(503 letters)
>mm_chr7_121555460_121556362
Length = 903
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%)
Strand = Plus / Minus
Query: 1 tgttctgtatcccttaagggagaacctatacgaataagccactaatatttccattaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgttctgtatcccttaagggagaacctatacgaataagccactaatatttccattaagtc 644
Query: 61 tggaggaacccgtcctgctcttttcattctcagggcctaaaacttaccctaaaaactaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tggaggaacccgtcctgctcttttcattctcagggcctaaaacttaccctaaaaactaat 584
Query: 121 taagtgcctaagaacacttttatcattgacagatgttatctcactacaagccattgtttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 taagtgcctaagaacacttttatcattgacagatgttatctcactacaagccattgtttc 524
Query: 181 ccttatagcaccatttgaaatatcccagcactagggtctatccaactgttaaaatacctt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ccttatagcaccatttaaaatatcccagcactagggtctatccaactgttaaaatacctt 464
Query: 241 ctgcatctgaactctctggtgctagtcattgatgcatcaaaaatggttcttagtaaagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctgcatctgaactctctggtgctagtcattgatgcatcaaaaatggttcttagtaaagcc 404
Query: 301 aaaagacaaagagatctcatgcttagtctcaaccattttccctctcatcataccttctag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaaagacaaagagatctcatgcttagtctcaaccattttccctctcatcataccttctag 344
Query: 361 taactaattccccacccttttgacttgtattttcaactgtttgggggaggtaggattttt 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 taactcattccccacccttttgacttgtattttcaactgtttgggggaggtaggattttt 284
Query: 421 ttcctaactcttaaatccagaagtaaagaaaatccatttctagagcaatattctcagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttcctaactcttaaatccagaagtaaagaaaatccatttctagagcaatattctcagaaa 224
Query: 481 tttctttcaaaaatcacattgtt 503
|||||||||||||||||||||||
Sbjct: 223 tttctttcaaaaatcacattgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
