BAC Information

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BAC

Clone NameMSMg01-504J24
Chromosome7 (Build37)
Map Location 108,593,249 - 108,593,789
singlet/doubletsinglet
Overlap genePde2a
Upstream geneAU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2
Downstream geneArt2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504J24.T7 (MSMg01no504_j24.b1)MSMg01-504J24.TJ (MSMg01no504_j24.g1)
ACCAG579459AG579460
length815752
length of high quality
(start - end)
169 (67 - 235)540 (68 - 607)
definitionCHROMAT_FILE: MSMg01no504_j24.b1 PHD_FILE: MSMg01no504_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:16 2005CHROMAT_FILE: MSMg01no504_j24.g1 PHD_FILE: MSMg01no504_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCAAAAAXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGACCGCGG
AANNCNNGGTTTTTCTCTGTTCCCATTTTTAATAGAGTTATTTGATTGTA
TGGAATCTAATTTCTTGAGTTCTTTGTATACATTGGATATTAGCCCTCTA
TCAAATGTAGGATTGGTAAAGATCTTTTACCAATCTGTTGGTTGCCGTTT
TGTCCTATANACAGTGTCATTTGCCTTACAGAAGCTTTGCAATTTTATGA
AATCCATTTGCCAATTCTTGATCTTANACCCATGCCATGGNNGNCCAANC
NGGACTCCGGCTTNATTCCNNNNNNCNNNTNNGGGGGGGGGGGGGGGGGG
GGGTGGTGGGNNNNNNNNNNNNNTTGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCNCCACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATAGAATGTAAGCAGCACGGATTTTGAAAATTT
CTTAGAACACGAAGCTGTGCAAGTTTCTCGGAGCCTTGAACGCACAGACT
GAGGACTCCCTGAAAGGTCTGTGAGTTAGCTGAGTATGGGGCTTTGGATC
CCCGTGGCTTATAGTGTCTTACCTCAGTTTCCCAAACAGGCCCTGCTCTG
AAAACCCCAGGGAAGGATGTGTGTCCAGGAAGGACAAGTTAATGATTGGT
TGTACTATGAGACTCCCCTGGAGTCTGTCGAGCTCAGGAATGGCAGCTGC
TTAAGTAGGGTTGTGCAGGGCTGTGGGTGGCCACACCACGGGAGGGCCAG
CCCATCCATTCAGTACTCTTGCAGCTTAGGCTCAGGAGGGCTGCATCTTA
CATGGCCCTTTCCTAGTGAAGGAGTCAGAATAGCTTCCTCCCCTGTTCTT
GTAGATGTCAAGAGGGGAGAAACGGCATCAGGAGGAAAGTGGGCCTTTAT
ATGAATGGATAGGGATGTGGGGATGAGCTTGGTAGGGCTCAGTGATGGGC
AGGAGATGCAATAAAGGGGGACTCAGTGGTGAGAGGTGGGTTAAGTGAGA
AGGCAATGAAGTCCAGGAGAGACTTTCAGTCCACGATTTCTCCGAAATGC
CTGTGTACTTTGATCAGGTTCCTGAAATAATGGATGGGATTTGGGATCTA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_j24.g1 MSMg01no504_j24.g1 CHROMAT_FILE:
MSMg01no504_j24.g1 PHD_FILE: MSMg01no504_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:17 2005
         (540 letters)



>mm_chr7_108593049_108593989
          Length = 941

 Score = 1000 bits (517), Expect = 0.0
 Identities = 535/541 (98%), Gaps = 1/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagaatgtaagcagcacggattttgaaaatttcttagaacacgaagctgtgcaagtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagaatgtaagcagcacggattttgaaaatttcttagaacacgaagctgtgcaagtttc 260

                                                                       
Query: 61  tcggagccttgaacgcacagactga-ggactccctgaaaggtctgtgagttagctgagta 119
           |||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||
Sbjct: 261 tcggagccttgaacgcacagactgacagactccctgaaaggtctgtgagttggctgagta 320

                                                                       
Query: 120 tggggctttggatccccgtggcttatagtgtcttacctcagtttcccaaacaggccctgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggctttggatccccgtggcttatagtgtcttacctcagtttcccaaacaggccctgc 380

                                                                       
Query: 180 tctgaaaaccccagggaaggatgtgtgtccaggaaggacaagttaatgattggttgtact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgaaaaccccagggaaggatgtgtgtccaggaaggacaagttaatgattggttgtact 440

                                                                       
Query: 240 atgagactcccctggagtctgtcgagctcaggaatggcagctgcttaagtagggttgtgc 299
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagacacccctggagtctgtcgagctcaggaatggcagctgcttaagtagggttgtgc 500

                                                                       
Query: 300 agggctgtgggtggccacaccacgggagggccagcccatccattcagtactcttgcagct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggctgtgggtggccacaccacgggagggccagcccatccattcagtactcttgcagct 560

                                                                       
Query: 360 taggctcaggagggctgcatcttacatggccctttcctagtgaaggagtcagaatagctt 419
           |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggttcaggagggctgcattttacatggccctttcctagtgaaggagtcagaatagctt 620

                                                                       
Query: 420 cctcccctgttcttgtagatgtcaagaggggagaaacggcatcaggaggaaagtgggcct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcccctgttcttgtagatgtcaagaggggagaaacggcatcaggaggaaagtgggcct 680

                                                                       
Query: 480 ttatatgaatggatagggatgtggggatgagcttggtagggctcagtgatgggcaggaga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatatgaatggatagggatgtggggatgagcttggtagggctcagtgatgggcaggaga 740

            
Query: 540 t 540
           |
Sbjct: 741 t 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space:   493430
Effective search space used:   493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)