BAC Information

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BAC

Clone NameMSMg01-504L12
Chromosome7 (Build37)
Map Location 86,933,617 - 86,934,311
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359
Downstream geneEG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504L12.T7 (MSMg01no504_l12.b1)MSMg01-504L12.TJ (MSMg01no504_l12.g1)
ACCAG579530AG579531
length746639
length of high quality
(start - end)		698 (49 - 746)---
definitionCHROMAT_FILE: MSMg01no504_l12.b1 PHD_FILE: MSMg01no504_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:24 2005CHROMAT_FILE: MSMg01no504_l12.g1 PHD_FILE: MSMg01no504_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACATGACGAATCTCTTGATTCTTTGTGTTTCTGCTTCCTG
ATCTGCACCTGTCAGGCAGCAGCAGGCACCACTCTCCTCACAGGGGCTCT
GCAGCTACAGGGACTTGATACCACATAGTTCCAACCCATGGACACTCGGC
CTGGCCATTGGCAGCTGCTTTGTAGCTGCTGGTCCTTCACCCAGGTTCTG
ACCAGCTCAGATGGAGAAAGCAGCTCCCTTCCTGGAAGACCGGCAGCAAG
GTTGAGAGTGGGCTGTCCGGGGCCCAGGTGCCCATGTGACTGTGCTAATT
GGAAGACCCAACTCCCTGGCCTGAGCCTTGACCTCTTCAGATCCTGCAAA
GGACGCAAAGGAGTTGAGGTGCTGTCTAGCAGACAGGTTCTGTGGTCAGT
CCTAACGCAGACACTGGGCATCTGCTGGAGCCTGCGAACCTCATCTTTCC
TTATAACTTCCCATCGTTATAATGTCCTGGCATTGGGATGCCTCTTAGAT
TGACTGAGTACTAGGGTGGTAGGCTCCCCCACCAAGGTTTGGAGTGCCTT
CCTGGGTGCAGGACTACTGTTGTCCTCCTGGGGACTGGCACTTGGGGTTT
CCTCCAGGTGCTGATTGGGCCAGGAAGGGGGGATGGGGCCTGGGATCAGT
GGGAGGTGACTCTTGACAACCCTCTGTCTCAGCCACTATTAGCAGG

CGGGGCNNNNNAAGAGAAGAAGAGGGAGNAGGCAAANNNNNNNNNNNNNN
NAGNACCAATGACAGGGTAGCCTGGNGGCCGCCGGTTCCAAACACAGGAN
GNGACACNANAGAATGCTCCAAAGGAGGGNCAGGAAGNCAGGGCAAACAG
AAGAAACCCGGGCCGGAAAAAACAAACAAAACAAACAAACCCCCAAAAAA
ACCTTTTGGGGGGGGGGTTAAAAAAAAAACCAATCCGGGGTTAAAACACA
AAAAAAAAACGTCCCTCCCCAAAAAAAAGGGGGGTTCCCCTCGAAAAAAA
ACTTGGGGGAAAAAAAATTCCCCCCCTATAAGGGGGGGGCCCCCGGGGGC
GCGGAAAACCCCCCCGGGGGGGGGGGGGGGGAAAAAAAAAAAAACCCCCC
CCCCCCCCGGGTGTTTGTTGCGCCCCCCCCCCCCCGCCCCAAAAAAAGGA
GGGGGGGTTTTTTTTTCCCGCCCCCGGAAAAACGGCAAAAAAAAAAAAAA
AAAAAACACACTCCAACCCCCCCTCTCCCCCGCGTAACCCTCCCCCTTCG
GGGGGGGGGGGGGGGGGGNGGGGGTNTACCGTAACCCCCCCCCCCGGGCG
GGGAGAAAAGAAAAAAAACACCCCCACCGGCGCGCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_l12.b1 MSMg01no504_l12.b1 CHROMAT_FILE:
MSMg01no504_l12.b1 PHD_FILE: MSMg01no504_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:24 2005
         (698 letters)



>mm_chr7_86933413_86934511
          Length = 1099

 Score = 1236 bits (639), Expect = 0.0
 Identities = 681/695 (97%), Gaps = 1/695 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacatgacgaatctcttgattctttgtgtttctgcttcctgatctgcacctgt 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcacaggaggaatctcttgattctttgtgtttctgcttcctgatctgcacctgt 264

                                                                       
Query: 65  caggcagcagcaggcaccactctcctcacaggggctctgcagctacagggacttgatacc 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||
Sbjct: 265 caggcagcagcaggcaccaccctcctcacaggggctctgcagctacagggacttgacgcc 324

                                                                       
Query: 125 acatagttccaacccatggacactcggcctggccattggcagctgctttgtagctgctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatagttccaacccatggacactcggcctggccattggcagctgctttgtagctgctgg 384

                                                                       
Query: 185 tccttcacccaggttctgaccagctcagatggagaaagcagctcccttcctggaagaccg 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 385 tccttcacccaggttctgaccagctcagatggagaaagcagctcccttcctggaagaatg 444

                                                                       
Query: 245 gcagcaaggttgagagtgggctgtccggggcccaggtgcccatgtgactgtgctaattgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagcaaggttgagagtgggctgtccggggcccaggtgcccatgtgactgtgctaattgg 504

                                                                       
Query: 305 aagacccaactccctggcctgagccttgacctcttcagatcctgcaaaggacgcaaagga 364
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagacccaacttcctggcctgagccttgacctcttcagatcctgcaaaggacgcaaagga 564

                                                                       
Query: 365 gttgaggtgctgtctagcagacaggttctgtggtcagtcctaacgcagacactgggcatc 424
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 565 gttgaggtgctgtctagcagacaggttctgcagtcagtcctaacgcagacactgggcatc 624

                                                                       
Query: 425 tgctggagcctgcgaacctcatctttccttataacttcccatcgttataatgtcctggca 484
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 tgctggagcctgcgaacctcatctttccttataacttcccatcgttacaatgtcctggca 684

                                                                       
Query: 485 ttgggatgcctcttagattgactgagtactagggtggtaggctcccccaccaaggtttgg 544
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgggatgcctcttagattggctgagtactagggtggtaggctcccccaccaaggtttgg 744

                                                                       
Query: 545 agtgccttcctgggtgcaggactactgttgtcctcctggggactggcacttggggtttcc 604
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 745 agtgccttcctgggtgcaggactactattgtcctcctggggactggcacttggggtttcc 804

                                                                       
Query: 605 tccaggtgctgattgggccaggaagggggg-atggggcctgggatcagtgggaggtgact 663
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 805 tccaggtgctgattgggccaggaagggggggatggggcctgggatcagtgggaggtgact 864

                                              
Query: 664 cttgacaaccctctgtctcagccactattagcagg 698
           |||||||||||||||||||||||||||||||||||
Sbjct: 865 cttgacaaccctctgtctcagccactattagcagg 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1099
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1089
Effective search space:   749232
Effective search space used:   749232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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