BAC Information

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BAC

Clone NameMSMg01-506C22
Chromosome7 (Build37)
Map Location 136,773,195 - 136,773,528
singlet/doubletsinglet
Overlap geneBrwd2
Upstream geneInpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
Downstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506C22.T7 (MSMg01no506_c22.b1)MSMg01-506C22.TJ (MSMg01no506_c22.g1)
ACCAG580639AG580640
length776755
length of high quality
(start - end)		338 (50 - 387)248 (81 - 328)
definitionCHROMAT_FILE: MSMg01no506_c22.b1 PHD_FILE: MSMg01no506_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:17 2005CHROMAT_FILE: MSMg01no506_c22.g1 PHD_FILE: MSMg01no506_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCATCTCTCTCCAGAGAGCCTTACCTGGACACGAGCAGGC
ACCTCTGCAAGAGAGAGAAGTCGGGATCAAGCAGGAGTTTCTTTATGTCG
CTGCAGACAGGAGCCCGGACAAAAGTAGGACAAACGTTTCCAGCCAAACA
AAAAGCAAAGGGAGGTAACAATACAAGTGCAGAATTTATAAGAGTGGTCA
CTTCATCCTGGCTCCCAACTTCACATGTAGAAGGGTGCTGTCAATCACCA
TGAGCACTAGGGCCAGGCCTCTGCTGTGCAGTCTAGCAGAGTTTACCTGA
CTACAAGAATAAGGACTTCACCATTGATAGCATTCTTAAAGTTGGCAGTT
TTCCAATTAAATACAAATGTTAATGTTTTGGAAACTGGAGAAAAGTGAAT
AGTTATTTTTGAAATTGCATTTAACAAGTACTATAACTTTTTTCAGATGA
TGACATTGATAATATTTGTGGGCAAAGTCCAGACCTGCAAAAATTGGGTT
TAAGAACCCCAGAACTTTCTGTTAAACCCCCTATTTTTCCCCCCCCTTTG
GGGAACCAAACCCCCCCCTAATTTTCTTTTAAGGGCGTTTAGGGGGTCCT
AAAAAAACACTTCTTTTTCTTTAACCCCGAAAATGTGGGGGATCCCCCAC
CTGGGGGCACCAGGGTGTGTTGTGGAAAAAAACCCCGGGCGCCTAATATA
ATAGGCTCCCTCACAAATTAATACCN

TTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTG
GGAGGAAGAAGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGC
CAAAAGCGGCTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGGCAGTCGG
TTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCATAGTGCGTCAGCA
ATGCGCAGAGAGGCAATGCGCAGAGAGGCAATGCGCAGAGAGGCAGTGCG
CAGAGAGGCAGTGCGCAGAGAGGCAGTGCTCATAGAGGCAGTGCGCAGAC
TCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGT
CTTTGAAAGAGCCGAAGGTGGGCGTGTCCACGCTCCAGTAGAATACGTAC
AGATAAAAGAACTCGCCGAGTCGGGTCGTAAATACGGAACCCAATGCTAA
TTTTTACCTTGGTGCAGTTAGACAGGCTCCGCCGCTTGGCACTAACTTCC
TGCTGACTGCACTGAACTCTCTAAGCATTGAGAAGGTGCACTGACAGCAC
ACATGTATCGAGAATGATTATGACGCGATTTCGATAATCTGGATACATCT
CGTAGCGAGCTCAATGACTGNTAATACGACTGCTCATTGCATGAGCAATT
TACAAATCCTGAACCTTACAAGGCGCTTCCAAAGTAAGCGTGATGGCCCC
GTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_c22.b1 MSMg01no506_c22.b1 CHROMAT_FILE:
MSMg01no506_c22.b1 PHD_FILE: MSMg01no506_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:17 2005
         (338 letters)



>mm_chr7_136772991_136773728
          Length = 738

 Score =  607 bits (314), Expect = e-178
 Identities = 329/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcatctctctccagagagccttacctggacacgagcaggcacctctgcaagag 64
           |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaattcagcatcccacttcagagagccttacctggacacgagcaggcacctctgcaagag 479

                                                                       
Query: 65  agagaagtcgggatcaagcaggagtttctttatgtcgctgcagacaggagcccggacaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agagaagtcgggatcaagcaggagtttctttatgtcgctgcagacaggagcccggacaaa 419

                                                                       
Query: 125 agtaggacaaacgtttccagccaaacaaaaagcaaagggaggtaacaatacaagtgcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agtaggacaaacgtttccagccaaacaaaaagcaaagggaggtaacaatacaagtgcaga 359

                                                                       
Query: 185 atttataagagtggtcacttcatcctggctcccaacttcacatgtagaagggtgctgtca 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 358 atttataagagcggtcacttcatcctggctcccaacttcacatgtagaagggtgctgtcg 299

                                                                       
Query: 245 atcaccatgagcactagggccaggcctctgctgtgcagtctagcagagtttacctgacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atcaccatgagcactagggccaggcctctgctgtgcagtctagcagagtttacctgacta 239

                                             
Query: 305 caagaataaggacttcaccattgatagcattctt 338
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 caagaataaggacttcaccattgatagcattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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