BAC Information

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BAC

Clone NameMSMg01-506P01
Chromosome7 (Build37)
Map Location 50,545,759 - 50,546,193
singlet/doubletsinglet
Overlap genenone
Upstream geneGprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620
Downstream geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506P01.T7 (MSMg01no506_p01.b1)MSMg01-506P01.TJ (MSMg01no506_p01.g1)
ACCAG581213AG581214
length745755
length of high quality
(start - end)
439 (52 - 490)245 (84 - 328)
definitionCHROMAT_FILE: MSMg01no506_p01.b1 PHD_FILE: MSMg01no506_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:18 2005CHROMAT_FILE: MSMg01no506_p01.g1 PHD_FILE: MSMg01no506_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGATCTCTTCAAATTGTCTCAGTGTTAACCTCTAAGCT
TGTTAGTTTTTGTCAGCTTGACATAGCTAGAGTGGCCCAGGAAGATGGCA
TCTCAATTGAGGAATTGCTTCCATCAAACTGGTCTTCTGTGGGGCGCTTT
GCTTGCTAACTAATGTATAAGGGCCCGCTGTCTCACGCTGTAAGAGAAAG
GTAGCTGAGCCAACTAGGAGAAGCAAACCAGTAAGCATCCTTTTACCAGT
GGTCTCTGCCTCCAAGTTCCTATCTCAGTGTTTGGATGATGCCCACATAA
CCCAACCACTCCACAACCACCAAATTAGCCTTGATCATTGTGCCTATCAG
TGCAACAGATAAGCAAACTGAGACATCATCCCTAGAAAGGCATAAACAAA
CATCTTACCACCTCCTATCCCCCAACCATGGCCTTAAAAGGCCCCAGTGA
CAAACCATTCTACCAAAGTCAATCTTTAGAAACCCAAGGAATTTATTGGA
TTTATTTACAGAGCATGGGGAAAGGTTACTTACAGGAGTGTAGGTGATCT
AAACTATCTGCACCACAGTGAGTCTCACTCCAGCAGTGTTGACAAGTTTC
CCATAGCTGCAGAGATGTGGGGCGGGTCTTCCCTCCAGTGAACTCCCCAC
CAAGCTACATGTAATTAGGGCAGAACCCATACAATTTAACGGGAG
TTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCT
TACCCCATAAAAACCCCTAGCTTTCAAGCCTTGTGGCCGACATCCGTTAT
CTCCTGTGTGAGATGCATGTCGGTCCGGAGCTCCGTCATTAAACTGCCTC
ATGTGTTTACAGCAGGAGGGATTCTCATGTTTCTTTGGGTGCGCTCTCTC
ACTCCCGAGACTAGAGTAGGGGTCCCCGAAAGGGGGTCTTACTGTGACAC
AAGACTGTAATGGAAACACTTGTGAGGTCAACACAGATAAATGGAGAATT
TAAGTCCAGCCCAGAATACAAAGAAGCCCTGTCATTTAAAAAAAAAAAGT
AGAGAAAAGATAAAACTGGAAAATGGGAACAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAATAGAAAGAAAGAAAGAGAGAAAGAAA
GAAAGAAAAGAAAAGAAAGGGAGGAGGGAGGGACAAAGAAAGAAAGAGAA
AGTGGGTAAGTGGGTAATGAGTTTGCCTAGGGGTAAAAGTGCTTGCCTAC
AAACCAGAAGGTCTTGATGCCTAAGATAAGTCACTGACAATTTGTATAGT
CTGGGTTCTGAAAGCCCAACCAAGTTGGAATCTGACTATTAAAGAGACAA
TAGGGAAACAAACAGATAAAGGAGAAGTATTAATTTTGCCACCTTGAGGT
TAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_p01.b1 MSMg01no506_p01.b1 CHROMAT_FILE:
MSMg01no506_p01.b1 PHD_FILE: MSMg01no506_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:18 2005
         (439 letters)



>mm_chr7_50545555_50546393
          Length = 839

 Score =  795 bits (411), Expect = 0.0
 Identities = 429/435 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagatctcttcaaattgtctcagtgttaacctctaagcttgttagtttttgtca 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatcccatcaaattgtctcagtgttaacctctaagcttgttagtttttgtca 264

                                                                       
Query: 65  gcttgacatagctagagtggcccaggaagatggcatctcaattgaggaattgcttccatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcttgacatagctagagtggcccaggaagatggcatctcaattgaggaattgcttccatc 324

                                                                       
Query: 125 aaactggtcttctgtggggcgctttgcttgctaactaatgtataagggcccgctgtctca 184
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 agactggtcttctgtggggcgctttgcttgctaactaatgtagaagggcccgctgtctca 384

                                                                       
Query: 185 cgctgtaagagaaaggtagctgagccaactaggagaagcaaaccagtaagcatcctttta 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggctgtaagagaaaggtagctgagccaactaggagaagcaaaccagtaagcatcctttta 444

                                                                       
Query: 245 ccagtggtctctgcctccaagttcctatctcagtgtttggatgatgcccacataacccaa 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 ccagtggtctctgcctccaagttcctatctcagcgtttggatgatgcccacataacccaa 504

                                                                       
Query: 305 ccactccacaaccaccaaattagccttgatcattgtgcctatcagtgcaacagataagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccactccacaaccaccaaattagccttgatcattgtgcctatcagtgcaacagataagca 564

                                                                       
Query: 365 aactgagacatcatccctagaaaggcataaacaaacatcttaccacctcctatcccccaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aactgagacatcatccctagaaaggcataaacaaacatcttaccacctcctatcccccaa 624

                          
Query: 425 ccatggccttaaaag 439
           |||||||||||||||
Sbjct: 625 ccatggccttaaaag 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)