BAC Information

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BAC

Clone NameMSMg01-507G15
Chromosome7 (Build37)
Map Location 85,091,945 - 85,092,475
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneA330068G13Rik, Ntrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507G15.T7 (MSMg01no507_g15.b1)MSMg01-507G15.TJ (MSMg01no507_g15.g1)
ACCAG581570AG581571
length1,463766
length of high quality
(start - end)		---531 (80 - 610)
definitionCHROMAT_FILE: MSMg01no507_g15.b1 PHD_FILE: MSMg01no507_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:57 2005CHROMAT_FILE: MSMg01no507_g15.g1 PHD_FILE: MSMg01no507_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATATTTTTTTATTATGGAGATTGGGGNNNNAAGAAAAAAANTAAATAA
TATCTTCCTACACAAACAACTGAAGGAGGATAGCAACGTTCGCTCTTCCC
CCTCTCCCTCATAGAAGACCACCCAACGTATATATGCAGATGACTGAGTA
TATAGAAGCGGAGAGAACCGTGAGCGTACAGTGCCGACCAGGTATACANC
GCGAAGCGTGGGCCGTCCACATAATACTCCGTTCAAACTCACCCGCTATT
ACGTATGACTCGCACACGCGATCATAATCCGCGACCACACCGTACTGTTC
TAACTTTAAGCGATATNATATATACGATAGTGAGAAGAGAGGAGTGTGCG
CGTGCTGGAGCGGCTGTGGCGAGCGGCCGTCGTAGGTACCAGATGTGATA
CGAAGTTTGTAGGTACACTGAGATACGATGGATACTCTGCTTCGCTATCA
CTGCTATTTGATGTATTGAAATCAGTCTGGTTACAGTGCCCTGATGGATA
TATCGCGCCGCGTAAAAGACAACAAACAAACCATAACTTAATACTTTAAT
ACACACGGGAGCACGAGGCGAGAGTAGTAGGAGTCGAACACGCAACGGCG
TGGCACGTAGCGCGAGAGCAGAGCAGGTCGTCGCATGGCAGCAATATAAG
AAGAGAATATGATCAGACACGAACGTAGAAACCGCTGATTGAGAGCGCAT
TAAGATAAGACGTGATGCATGGAGAGAGCATGGGCGCTCGTATTTCAGTC
GAGGAGCTATAACATAGATGTANACAGATATTACATTATTCGCCGAACTG
TACTGATAGTGGCATGTCGCTTGCTACGGTGTGAGTGATAACGCGTAGAG
TAGAACTGTGCGTTGCTGCGCGTGAGACGTACGAGTGTGGCAGGAGACCA
TGTCGGATGAAGGACAATACACGTATACTGCGAATCATACACTGGATATA
NGCACACGAGTCATAGACTCAATGGATGCGAAGATCTGAGCTGCACGACG
ATCTCGACTGTACCATCGAGATGTGTGAGCTCGACGGAGCTGCTGTCGGG
CTTCGAGCGCCTGCATCCTGGGCGAAGTCCACGGCACGCGCGTGATGAGC
GAGCGCGTGCGGCGATGTGATGGTCAACCGATGCTTTAAATGAGCAGTGT
GCATGGTCCAGAACAGAGTATATGCGACGCTCACGATACACCTATATGTA
TCGTTAAGTTAACCCGGATGAGAGAGCATATGGCGCTCGATGAGAGAAGC
AGAAGCGTCGAACGCGATTTATGTCGTCTCTCTAACGACTGAGCTCGTCT
ATCACGCGAGTATATGTGTGGAGCGATATGTCCTCNACTAATTCCATCTC
TGTATGATACACTATTGAAGATCACCACTGCGCACACGCGGATCATGGCC
TATATGCAATGCACCGATACGCGGTCTGCTCGCTGAACGCTGAGGTGAGC
GAGATATGATGTT

NNNTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATTGAAGAGCTAATGTCT
TGCATACTGCTCTTTATTCAGTGCCTGGGACAGCACCCTCCTTCTTCCCT
TCCACCAAAGGTCATTGCCTTCACTGACATTTTCTCTTCCTATCACACTC
AAGGTTTACCTTTAAGATCTTGGGATGTGTATTGGGGAACACTTCACATG
ATTTATCCTTAATCCTGTTACTTTCTAAGCAATTCCTTACAAATAACAAC
ATTGAACATGTTGCAAGAATTTAAACTAAGCAAACTAAGCAAATATCTGG
CATGAGGATTAATGAACCAACATCAGGGTGAGTGCCCTTCATGAGGTGGC
CAAATAAGTTAAGGAGGTGTGTGATATAACTGGGCTATGATTATTCTGGA
AGATTAGGGAGTCAATCAGGTTTAGAGAGGAATTCTGAAAGAGACTACAT
GATGACAGGCTGACGGGAGAGACAAGGAATAAGGGTATCTAATGGTTAGT
AGTCATTCGTCAATATGGAGATTCATGGCTGAGGGCAGAACAATTGATCC
TTATGCCTTCGGATGGGAAATGTTCTAGGTCTACTAATGTAGAATTAAAA
ATGGGACTAGGAAGAAGCTTTAGATTGGGNTTTTCTTCCTGTTTTTAATG
CTTGGTATGGCTGAAATAAATGGCAAGCAGCTTATTTGAATCTACCCATG
AAAAAGTGGGGACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_g15.g1 MSMg01no507_g15.g1 CHROMAT_FILE:
MSMg01no507_g15.g1 PHD_FILE: MSMg01no507_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:57 2005
         (531 letters)



>mm_chr7_85091745_85092675
          Length = 931

 Score =  988 bits (511), Expect = 0.0
 Identities = 526/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaattgaagagctaatgtcttgcatactgctctttattcagtgcctgggacagcaccct 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaattgaagagctaatgtctcgcatactgctctttattcagtgcctgggacagcaccct 260

                                                                       
Query: 61  ccttcttcccttccaccaaaggtcattgccttcactgacattttctcttcctatcacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttcttcccttccaccaaaggtcattgccttcactgacattttctcttcctatcacact 320

                                                                       
Query: 121 caaggtttacctttaagatcttgggatgtgtattggggaacacttcacatgatttatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggtttacctttaagatcttgggatgtgtattggggaacacttcacatgatttatcct 380

                                                                       
Query: 181 taatcctgttactttctaagcaattccttacaaataacaacattgaacatgttgcaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatcctgttactttctaagcaattccttacaaataacaacattgaacatgttgcaagaa 440

                                                                       
Query: 241 tttaaactaagcaaactaagcaaatatctggcatgaggattaatgaaccaacatcagggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaactaagcaaactaagcaaatatctggcatgaggattaatgaaccaacatcagggt 500

                                                                       
Query: 301 gagtgcccttcatgaggtggccaaataagttaaggaggtgtgtgatataactgggctatg 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 gagtgcccttcatgaggtggccaaataagttaaggaggtatgtgatataactgggctatg 560

                                                                       
Query: 361 attattctggaagattagggagtcaatcaggtttagagaggaattctgaaagagactaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attattctggaagattagggagtcaatcaggtttagagaggaattctgaaagagactaca 620

                                                                       
Query: 421 tgatgacaggctgacgggagagacaaggaataagggtatctaatggttagtagtcattcg 480
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 tgatgacagactgatgggagagacaaggaataagggtatctaatggttagtagtcattca 680

                                                              
Query: 481 tcaatatggagattcatggctgagggcagaacaattgatccttatgccttc 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaatatggagattcatggctgagggcagaacaattgatccttatgccttc 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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