BAC Information

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BAC

Clone NameMSMg01-507M07
Chromosome7 (Build37)
Map Location 46,929,215 - 46,929,733
singlet/doubletsinglet
Overlap geneLOC100039050
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133
Downstream geneEG668540, 4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507M07.T7 (MSMg01no507_m07.b1)MSMg01-507M07.TJ (MSMg01no507_m07.g1)
ACCAG581839AG581840
length7431,858
length of high quality
(start - end)
524 (47 - 570)---
definitionCHROMAT_FILE: MSMg01no507_m07.b1 PHD_FILE: MSMg01no507_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:25 2005CHROMAT_FILE: MSMg01no507_m07.g1 PHD_FILE: MSMg01no507_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCTTGGGTGATGTCTCTTCTCTGAAGACTACATAATCTTTCAATAT
TTTTTCAATTTATTTATTTTAATTTTGTGTATGAATATTTTTCCTCTTTA
TATGTACACATATCACATACATTCCTGGTGTCCAAAGAAGTCCAAACTGA
TGTTGCAGATGTTGGATGGTGAAGGCTGGGCACGAAATCCAGGTCCTCTA
CAAGAACATCATGCACTCTTAACCTCTCAGCCATCTCTCCAGCCCTTATG
TAGTCTTATTTATTTTTTCATGTTTGTATATTCTGCAGGACAAACCCAGT
GCCTTGTACATGTTATGCAAATACTCTGCTCCAGAGTCACATTTAGCACA
TTTTTTGTTGTTCTGGTTTTGCCCGCCCGTTGTTGTTGACACAGAATGAT
CCTGAGTGGCCTGGTACTCACGATTTGCCTCTGTCACTCAAGTGCCGAGG
TTACAGGTCTGAGGCAATACACTCAGCTAGCTGGATAGTGGTTTTTGTTT
GTTTTGTTATTGTTGTTTAATGTCTTTCTAGGGTGGAGGTTAGACCTCAG
TCTTATTTGCTAAGCGTGCATGAAGACCTTGCTTGTGATCACTGACATGA
GGGGCTGATAGAGAGGGAAAAAAAGAACAATCTTCTCTTATAACACAGAA
TAGGAAACTGTTATCTGTACCTGTGGACTCCTGTTTATCTGTT
TGAATGAAGTTGAAGTAANAGATAGGCCNCNCNCTGAACACGCCGCNCAG
AGAGATCATCTCCTCACAATAACATAATCGTCGNGCTGCGCCNCGAGTGA
GCAGTGCGATCCTTCCCTTCTGCTACAATATAATGTCGATATAGAGCGTG
ACAACCGACTGATGAGCATAACGCGCAGGACATCTGAGAGCTTCTCTGGC
GCACGACGACCTCCATATAGCATAGCTATACGATAATAATAAACGAATCG
GGAAGGCAGAAGGCGTGAGGCCATGAAACGAAGCGAAAGACGAGACCGCC
GAAGNCGAGGAACGCACNACATGACAGCGAGAGNACGCAGGACGCACGCT
CCGATACGCTGCCGCGCCNTGCGCGACACAGCGTAGCGTCGGTGCTCGCG
ACGAGTGTGTATCTGAGCTGTGCGGCTCGGTGTGTNTNGAATCACTCGTG
TCTNGTAATTGCCTAGTACACACTGACTCACTCGTGTGCTGCGCATATCA
CTCCTCTATCNACTCATGTCGATGCTGCGACCGACAANCANCTGNATATA
TAGTATAGGCGAGTGAGCAGATGTAGTCACGTTATGTAGATGACACGACT
AGACCAGGTCGCAAGCGTAACACGTGGNTNCGAGCGGTGCTACGCGAGCA
CTCACCNACACCTATGCAGACATCTATCCNTAGATACCTAACGCGATACC
CAACCAGACTAGACGAGAGACAGCGTCACTGATGTAGCCGTGCTCTCAGC
GATGATCATACTGATATTCATGNAATATATACACGCTCATCGATATATCA
TATAATATGTACACCATATGCGACACCTAACGACATGATAGTTTTAGTGA
TTTACATATTATGTATACATCATACCACTATCATATAAGTGCATATGTCA
TATCANCGTGATGTTACACATAGCATGATACATCACATGCCAGGAGCTGG
TACTGATANAGTATCGATGATGATACGATCAAGCAGTGTCGCAGNAGCGG
CATGCGTNACACGCACGGTATGTCTATGACGCGCGAACGTAGCGATAGAC
TGGCGGATTACATNCGACTCAGANANGACTCGCGCAGCATATCGTCGGTG
ATGCTCAGTATCCAGTGTGAACNCTATACATATAGGCATATAGTAGATTG
ATAATCACTCGCGTGCNCGAATACTCCATCATATGCANCANTGATATACG
TACATGCGATATCTGCCCATGACTCTNGNGACTGCACACGCANAAAGTCC
GTAGTACGCGCGACGGTCTAGAGTATACATAGTGTCATATGTGATACNCG
NGCACTGCTGACGTTAGGACATCTCGATCAGATGCGTCAGCACAGTANAN
CATCATGANATAGCAACGGTCATCGTTAGTATACAGCTACACGANCNTAC
ACGAGTAACTGGACGATACTGCTGACTACATGATCACATCCCGCGACGCT
GTACTACTATGTGAAACAATGACTAGTATACATCGCTAGTAGTAAGTAGT
ATGAGCATTCATCGACACTCTCGCGACGTGTCGTCGTTGCCTACCTACAT
ACCTCTGCTGGNTAACACTACGCACACAGCAACAAGCCGCGCTACGCGAC
GTACTCTCAGCTGTATAGTCTGACTCGTACCTCTGTACGACGCTCGATNC
GCGATAGATGCGACTATATAGATCGATAAAATGNTCATGCGCCACTGGAT
GATATATGCNTACAACACNATATACTACTAGAANACATCATCGAGTAGTT
GACAGACATCNTGCGTACTCATANCTCTATGGAGCTTACAGCTCGATGAC
ACCAGCCCGGGAATCTGACGNTCATACGTATCGCGAATAATCTNCACCGA
CGATGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_m07.b1 MSMg01no507_m07.b1 CHROMAT_FILE:
MSMg01no507_m07.b1 PHD_FILE: MSMg01no507_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:25 2005
         (524 letters)



>mm_chr7_46929010_46929933
          Length = 924

 Score =  928 bits (480), Expect = 0.0
 Identities = 510/520 (98%), Gaps = 1/520 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgggtgatgtctcttctctgaagactacataatctttcaatattttttcaatt 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttgggtgatga-tcttctctgaagactacataatctttcaatattttttcaatt 264

                                                                       
Query: 65  tatttattttaattttgtgtatgaatatttttcctctttatatgtacacatatcacatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatttattttaattttgtgtatgaatatttttcctctttatatgtacacatatcacatac 324

                                                                       
Query: 125 attcctggtgtccaaagaagtccaaactgatgttgcagatgttggatggtgaaggctggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcctggtgtccaaagaagtccaaactgatgttgcagatgttggatggtgaaggctggg 384

                                                                       
Query: 185 cacgaaatccaggtcctctacaagaacatcatgcactcttaacctctcagccatctctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacgaaatccaggtcctctacaagaacatcatgcactcttaacctctcagccatctctcc 444

                                                                       
Query: 245 agcccttatgtagtcttatttattttttcatgtttgtatattctgcaggacaaacccagt 304
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 445 agcccttatgtagtcttatttattttttcatgtttggagattctgcaggacaaacccagt 504

                                                                       
Query: 305 gccttgtacatgttatgcaaatactctgctccagagtcacatttagcacattttttgttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccttgtacatgttatgcaaatactctgctccagagtcacatttagcacattttttgttg 564

                                                                       
Query: 365 ttctggttttgcccgcccgttgttgttgacacagaatgatcctgagtggcctggtactca 424
           |||||||||||   |   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctggttttgtttgtttgttgttgttgacacagaatgatcctgagtggcctggtactca 624

                                                                       
Query: 425 cgatttgcctctgtcactcaagtgccgaggttacaggtctgaggcaatacactcagctag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgatttgcctctgtcactcaagtgccgaggttacaggtctgaggcaatacactcagctag 684

                                                   
Query: 485 ctggatagtggtttttgtttgttttgttattgttgtttaa 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctggatagtggtttttgtttgttttgttattgttgtttaa 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)