BAC Information

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BAC

Clone NameMSMg01-508C15
Chromosome7 (Build37)
Map Location 28,580,300 - 28,580,904
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229
Downstream geneLOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508C15.T7 (MSMg01no508_c15.b1)MSMg01-508C15.TJ (MSMg01no508_c15.g1)
ACCAG582141AG582142
length738754
length of high quality
(start - end)		644 (76 - 719)607 (81 - 687)
definitionCHROMAT_FILE: MSMg01no508_c15.b1 PHD_FILE: MSMg01no508_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:59 2005CHROMAT_FILE: MSMg01no508_c15.g1 PHD_FILE: MSMg01no508_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACCATAATTTGCGGCGCTAAACGACTCACATTTTCAGAATAGCGCN
GGAATCAGTTTTCATTCATAAACTGAGAATTTTTGTATCTACGTTCATTG
AGGAAATTGGTCTGTAGTTCTCTTTGTTGGATCTTTATGTGGTTTGGGTA
TCAAGGTGCCTGTGGCCTGTCTCATAAAAAGAATCGAAAAGGTGTTCCTT
GTGTTTCTATTTCAGCATTGATTTGAGCATGAGCTGTTCTTTGAAATTTT
GGTTGAATTTTGAGCTAAAGCATCTGCCTTTTTGTTATAGTTGTTGTTGT
TGTTGTTTGGGAGACTTTTAATTATTGTTTCTATTTCACTATAGACTGCT
TAAAATTTTTTTTTATCTAGTCTTCCATTAACTTTGTTAAGTGGTATGTA
TTGGAAACATCACTCATTTCTTTTGGATTTTCCAATTTGGTGGAGTTTAG
GTTTTTAATTGCATGTCCTAAATGAACCTCTAGATTTCCTATGTATCTGT
TGTTATGTATAGTGAAAACTTTTGAGAATTTTGAACTTTGTTTTCCCTAA
AAAATAAAGAAATATTATAAGGATGTGCTTTCACTTTAATCCCAGTTGTA
GTGAAGTGGAGCTGCTTCAGACTGTCCACAGCAGCTGGCCATGATTTGCT
TCATACAATGCTAGTTTTGCCAGCTGCATTTAATTTCTTTGACTGTGTGA
TGGTTGGAATATTGGGACCTTTCAGAGGGTACATAAAG

TTTTTGCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGGTCCCCTGAA
CATCTATCTGCTTGTGATTTTGTGCTTCAAAAAGAAACTTGATCCTGCTT
TCTTAGGGTTGTTGCTGTCAGCTCTGAGCCTGACCTCCATTGTACATAAT
CAGTTAGAAGCATTTTCCCATGATGAATAAAGTTGCTTTTGGTTTAATTC
TGATTTTGGTCATCCTTTTTCTCATTATTTGTGTGCCCTGTGACCCCAAC
ATTTTGGTGCATGGGTCAGGAAAGTGTATATGTTCTCCCCTGCTGTATGA
GAGGCCCAGGAAGCTCACAGTTTGAGGAAGAGAGACCTCAAGTCTCTGGC
AACTTTATTCTTTTGGTCCTGACCGATTGGTAAGTTTTTCTCTGGTTTCT
CTTTCTGGTATCTGGATAAACTGGGCCTCAATGGAGAACAGGTAGGTATG
CTGTTGATCTCAAAGATGCAAGTGTTGAAGGGACCTCTTGACCCTTCACT
TTGGCTGTTGGGTTGCTCATTTGAAGCCCTTTGGAATTTGTGCAGGTCTG
CCAACTCCTGGCAGACTAACAAACAGTGCTCGTCCTTCTGTGTCAGCTAG
TTTTCTGCCTGGCGCCTGCCTTCATTTTCCTTTTGGTGTCTCATTCACTG
TCGATTTTCTTGTCATTTTTAACACTGAGCTGGTTCTAATTAGGACTCAG
GTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_c15.g1 MSMg01no508_c15.g1 CHROMAT_FILE:
MSMg01no508_c15.g1 PHD_FILE: MSMg01no508_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:59 2005
         (607 letters)



>mm_chr7_28580100_28581104
          Length = 1005

 Score = 1050 bits (543), Expect = 0.0
 Identities = 591/607 (97%), Gaps = 2/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctttatggtcccctgaacatctatctgcttgtgattttgtgcttcaaaaagaaactt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 201 cttctttatggtcccctgaacatctatctgcttgtgattttgtgcttcaaaaggagactt 260

                                                                       
Query: 61  gatcctgctttcttagggttgttgctgtcagctctgagcctgacctccattgtacataat 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gatcctgctttcttagggttgttgctgtcagctccgagcctgacctccattgtacataat 320

                                                                       
Query: 121 cagttagaagcattttcccatgatgaataaagttgcttttggtttaattctgattttggt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 cagttagaagcattttcccatgatgaataaaattgcttttggtttaattctgattttggt 380

                                                                       
Query: 181 catcctttttctcattatttgtgtgccctgtgaccccaacattttggtgcatgggtcagg 240
           | ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtcc-ttttctcactatttgtgtgccctgtgaccccaacattttggtgcatgggtcagg 439

                                                                       
Query: 241 aaagtgtatatgttctcccctgctgtatgagaggcccaggaagctcacagtttgaggaag 300
           |||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 440 aaagtgtaga-gttctcccctgctgtgtgagaggcccaagaagctcacagtttgaggaag 498

                                                                       
Query: 301 agagacctcaagtctctggcaactttattcttttggtcctgaccgattggtaagtttttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agagacctcaagtctctggcaactttattcttttggtcctgaccgattggtaagtttttc 558

                                                                       
Query: 361 tctggtttctctttctggtatctggataaactgggcctcaatggagaacaggtaggtatg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 559 tctggtttctctttctggtatctggataaactgggcctcaatggagaacaggcaggcatg 618

                                                                       
Query: 421 ctgttgatctcaaagatgcaagtgttgaagggacctcttgacccttcactttggctgttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgttgatctcaaagatgcaagtgttgaagggacctcttgacccttcactttggctgttg 678

                                                                       
Query: 481 ggttgctcatttgaagccctttggaatttgtgcaggtctgccaactcctggcagactaac 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 679 ggttgctcatttgaagccctttggaatttgtgcaggtctgccaattcctggcagactaac 738

                                                                       
Query: 541 aaacagtgctcgtccttctgtgtcagctagttttctgcctggcgcctgccttcattttcc 600
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 739 aaacagtgctcgtccttctgtgtcagttagttttctgcctggcgcctgccttcactttcc 798

                  
Query: 601 ttttggt 607
           |||||||
Sbjct: 799 ttttggt 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1005
Length adjustment: 10
Effective length of query: 597
Effective length of database: 995
Effective search space:   594015
Effective search space used:   594015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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