BAC Information

Click to search

BAC

Clone NameMSMg01-508D04
Chromosome7 (Build37)
Map Location 81,613,902 - 81,630,798
singlet/doubletdoublet
Overlap geneSlco3a1
Upstream geneChd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, EG665308
Downstream geneEG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508D04.T7 (MSMg01no508_d04.b1)MSMg01-508D04.TJ (MSMg01no508_d04.g1)
ACCAG582167AG582168
length760756
length of high quality
(start - end)		633 (52 - 684)580 (83 - 662)
definitionCHROMAT_FILE: MSMg01no508_d04.b1 PHD_FILE: MSMg01no508_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:01 2005CHROMAT_FILE: MSMg01no508_d04.g1 PHD_FILE: MSMg01no508_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:01 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(81,613,902 - 81,614,264)(81,630,433 - 81,630,798)
sequence
NNNNTTCTAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGGAAATTTAGGAGGCCTGACTCCTGAGTCTGAACAG
GTAACAAATCACAGCTCGTTTGTTAAATACTCCCCCTCACAGAATAATTA
AAAAAGCAACATGAGATAATGATAGTCTCCTAGCAACTTAGATAATATGA
CTGAACCTCCTGAAAAGCCATATTTGAACTCTTGTGTAGGTTAGAAGTTA
CTTTGACTGCTTTCCTTAGGGTCTCTGAACACACACACACACACACACAC
ACACACACACACACACACACAGACTTGTGGATGCTTGACAAGCACGCTAA
AAACTGAGCTAGATCTCCAGCAGTATTTTGTATCGTTTTAGTTGGAGTAT
TGGAATAGGTAGCTAAGCTCAACCCAGTGGGGCTGTTGGGACCAGGGTTT
TAACCCCAATGCTCCAGTCATGCTCCTCTGCCCTAACTACAAGGTCTTCT
GATGTTCTGGGCCATTGTTTCTCTGTAACATGGAGACAATAGTCAGCAGC
AGTCCACAGTGGAAGACCAGGTGAGGGGATGAAGTGCAGAGTGCAGAAGA
GTAGCTACCATGTGAGTAGCTGCCATGATGCTTATGAAAGCAACAAGACA
GACATGAGGCAGCATCCACTCGTGGGTGAGTGAGGTGGAAGAAGACTCCT
GAACAGTGCACCGAGGGCATGACTAGGGTCCTAGGCAGAGGGAACAGCAT
GGATCATGGT

NNNNNGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGCCAGGGTCCAGT
GAATTTGAGCCCAGAGCCCTTATAATGAATGCTTTCTACCTGTGATGGTT
AATGTTGACTGGATTTAGAATTATCTAGGAGGCAAGCCTGTGGGGGTGTC
AGGGAGGGCATTTGCAGAGAGATTTATCTGGGGATGGACGGGCTACACCA
AATGTGGACAGAGTGACTCCCCAAACTGGGGCCCTGCACTGAATAAAAAG
AGGAAATCAGACTGAGCGCAGCCATTCACTCTCTGCCTCCTGACTGTGGA
CAGACACAGTACATTATGACCAGCTGCCTCTTGCTCCTTCTGGTCTACCT
TTCTCCACCATGATGCACAGTGACCTCAAACTAAACCTTTGCCTTTAAGT
TACTTTCTGTCATACATTTTGTCATAGCAGGGGGAAATTAATTAATGTAC
TCATTAGGTGACTGATAACTTAGAGATTCCAGAGACAGCAGGGAGCTACG
TTTCCTGCTTAGCATTATGTGCATATCAAGCCCACCTGTGATTAGGAATC
ACAGAGGTGCAGTGGAGGATGGGTGGGCACCAAGCATAAGTTAAGGTTCC
TTGGGGACAGTAGGCTTCCTAAGCTTGGACTCTGATGCTCTACCTTCTAG
GCTCCCCTTAGCCTATGGGCTTCTCTATTCCTATATCTGCCTTAGACACA
GAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_d04.b1 MSMg01no508_d04.b1 CHROMAT_FILE:
MSMg01no508_d04.b1 PHD_FILE: MSMg01no508_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:01 2005
         (633 letters)



>mm_chr7_81613432_81614464
          Length = 1033

 Score =  694 bits (359), Expect = 0.0
 Identities = 362/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 271 gacttgtggatgcttgacaagcacgctaaaaactgagctagatctccagcagtattttgt 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gacttgtggatgcttgacaagcacgctaaaaactgagctagatctccagcagtattttgt 530

                                                                       
Query: 331 atcgttttagttggagtattggaataggtagctaagctcaacccagtggggctgttggga 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atcgttttagttggagtattggaataggtagctaagctcaacccagtggggctgttggga 590

                                                                       
Query: 391 ccagggttttaaccccaatgctccagtcatgctcctctgccctaactacaaggtcttctg 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ccagggttttaaccccaatgctccagtcatgctcctctgccctaactacaaggtcttctg 650

                                                                       
Query: 451 atgttctgggccattgtttctctgtaacatggagacaatagtcagcagcagtccacagtg 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atgttctgggccattgtttctctgtaacatggagacaatagtcagcagcagtccacagtg 710

                                                                       
Query: 511 gaagaccaggtgaggggatgaagtgcagagtgcagaagagtagctaccatgtgagtagct 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaagaccaggtgaggggatgaagtgcagagtgcagaagagtagctaccatgtgagtagct 770

                                                                       
Query: 571 gccatgatgcttatgaaagcaacaagacagacatgaggcagcatccactcgtgggtgagt 630
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gccatgatgcttatgaaagcgacaagacagacatgaggcagcatccactcgtgggtgagt 830

              
Query: 631 gag 633
           |||
Sbjct: 831 gag 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no508_d04.g1 MSMg01no508_d04.g1 CHROMAT_FILE:
MSMg01no508_d04.g1 PHD_FILE: MSMg01no508_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:01 2005
         (580 letters)



>mm_chr7_81629819_81630798
          Length = 980

 Score =  661 bits (342), Expect = 0.0
 Identities = 360/366 (98%)
 Strand = Plus / Minus

                                                                       
Query: 215 aaagaggaaatcagactgagcgcagccattcactctctgcctcctgactgtggacagaca 274
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 980 aaagaggaaatcagactgagtgcagccattcactctctgcctcctgactgtggacagaca 921

                                                                       
Query: 275 cagtacattatgaccagctgcctcttgctccttctggtctacctttctccaccatgatgc 334
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 920 cagtacattacgaccagctgcctcttgctccttctggtctacctttctctaccatgatgc 861

                                                                       
Query: 335 acagtgacctcaaactaaacctttgcctttaagttactttctgtcatacattttgtcata 394
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 860 acagtgacctcaaactaaacctttgtctttaagttgctttctgtcatacattttgtcata 801

                                                                       
Query: 395 gcagggggaaattaattaatgtactcattaggtgactgataacttagagattccagagac 454
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 800 gcagggggaaattaattaatgtactcattaggtgactgataatttagagattccagagac 741

                                                                       
Query: 455 agcagggagctacgtttcctgcttagcattatgtgcatatcaagcccacctgtgattagg 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agcagggagctacgtttcctgcttagcattatgtgcatatcaagcccacctgtgattagg 681

                                                                       
Query: 515 aatcacagaggtgcagtggaggatgggtgggcaccaagcataagttaaggttccttgggg 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatcacagaggtgcagtggaggatgggtgggcaccaagcataagttaaggttccttgggg 621

                 
Query: 575 acagta 580
           ||||||
Sbjct: 620 acagta 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |