BAC Information

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BAC

Clone NameMSMg01-509C01
Chromosome7 (Build37)
Map Location 128,136,280 - 128,136,795
singlet/doubletsinglet
Overlap gene4933427G17Rik
Upstream geneDnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2
Downstream geneEG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509C01.T7 (MSMg01no509_c01.b1)MSMg01-509C01.TJ (MSMg01no509_c01.g1)
ACCAG582878AG582879
length735758
length of high quality
(start - end)
659 (74 - 732)159 (84 - 242)
definitionCHROMAT_FILE: MSMg01no509_c01.b1 PHD_FILE: MSMg01no509_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:16 2005CHROMAT_FILE: MSMg01no509_c01.g1 PHD_FILE: MSMg01no509_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTGACTCCCTCGGGATCGCATAGTTGAATAGGGGAG
CCACATTCTCCCTTGAGAGATTCCAAAGCTCTACTCTTAGATGTTACTAA
TCTGCTTCTTTTAAGGGCGCATGATGACTGACTGAATTCTTAAACAGCTA
TTAGAGAAAAGACTTGATTTCCTCAGCCACACCTTCTGCACACACTGGAT
TCCAGGATCCCAAAAGCTCAGCTCTGTTGGGCCTGGTTAGGACCTGTACG
GGAGGAAGACCACATACGCGCTTTTTTTTTTTTTTTTTAGATTAGTTTTC
AGTCCATAGACTAGGCTGGCCTGGAATTCATGCCAATCCTCCTGCCTCAA
CCTCCTGGGTACCATCAGATCTGTCTTGGTCTTTCTTTTCTCCTTCCATT
TTCTCAGTCTCTTGAGATGAATTCCACTGTGCAGTCAGCCTCAGAAAAGG
GAAACCATGCCCAATGATTAAAGTGGGTTACAGCCATTTAGTCAAACATT
GACAACTCTCAGCTCATGAAAGTATCATTTATCTAGAAATGAAGAATACA
TTAAAACAGCTTTGTATTTCATATGTTCTTGTGGGGGATTGAGGAGGAAG
GCTGTTGAATTCTGTTGGCCATATTTAGGAAAAGACTAAGTATTTACTGG
CTGAATATTTAGCTTAGTGGGAGCACTAACTACGC
NCCCCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTCCATATGTATGT
GTGTTTTCCATTGTTTTTGTTGCTATTTAAGACCAGCCTTAGTCCATGGT
GATCTGATAGGGTACAGGGGCTTATTTCTATCTTCTTGAACCTGTTGAGG
CCTGCTTTGTGATCTCTTATATGGTCAATTTTGGAAAAGGNTACCTATGG
NAGATGNANNTGAGAATAGGGTGTATTCTTTTGCTTTAGGATGGATTGTT
CTATAACTTCTGTTAGNATATTTGGTTCAAAAATCCTGTAGTTCCCCTGG
CCCCCGGTTAAGTTTCTTTTTTCCCGGGAAATCTGGCCCTTTTGTTTTAA
AAAAGGGGGGGGGGGGAAAAGACCCCCCCGCAAAAATAAGAAAAGGGGGG
GCAACGAGAGCTTTTTTTAGCGCTTTTTAAAAAACCCCTCTTTTTTTTTT
AAAAAAGGNNNNNNCCCCCCCCCCNNNNNNGGGCCTGCCTGTGAGGGTGN
NNNNNNNNNNNNNNNCCTCCTTTGGGGNNTATTTTTTCTTTTTTCCCCCT
TAAAANNNCTCTCCCCCCCCCCCCCTTTTTTTTTGAGGAAAANCNTGGGG
GGAAAAAGAAAAAATTTTTTTTTAAAAAAAAAAGGAGGGGGCCCCCTCCC
CCCTCCCTTTTCAAAAAAATTTGAGGGGGGGGGAAAAAATTATTTTCCCC
CCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_c01.b1 MSMg01no509_c01.b1 CHROMAT_FILE:
MSMg01no509_c01.b1 PHD_FILE: MSMg01no509_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:16 2005
         (659 letters)



>mm_chr7_128135741_128136795
          Length = 1055

 Score =  963 bits (498), Expect = 0.0
 Identities = 512/520 (98%), Gaps = 7/520 (1%)
 Strand = Plus / Minus

                                                                        
Query: 143  gatttcctcagccacaccttctgcacacactggattccaggatcccaaaagctcagctct 202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 gatttcctcagccacaccttctgcacacactggattccaggatcccaaaagctcagctct 996

                                                                        
Query: 203  gttgggcctggttaggacctgtacgggaggaagaccacatacgcgc---ttttttttttt 259
            ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 995  gttgggcctggttaggacctgtacgggaggaagaccacatacgcgctttttttttttttt 936

                                                                        
Query: 260  ttttttagattagttttcagtccatagactaggctggcctggaattcatgccaatcctcc 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935  ttttttagattagttttcagtccatagactaggctggcctggaattcatgccaatcctcc 876

                                                                        
Query: 320  tgcctcaacctcctgggtaccatcagatctgtcttggtctttcttttctccttccatttt 379
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 875  tgcctcaacctcctgggtaccatcagatctgtcttgttctttcttttctccttccatttt 816

                                                                        
Query: 380  ctcagtctcttgagatgaattccactgtgcagtcagcctcagaaaagggaaaccatgccc 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815  ctcagtctcttgagatgaattccactgtgcagtcagcctcagaaaagggaaaccatgccc 756

                                                                        
Query: 440  aatgattaaagtgggttacagccatttagtcaaacattgacaactctcagctcatgaaag 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  aatgattaaagtgggttacagccatttagtcaaacattgacaactctcagctcatgaaag 696

                                                                        
Query: 500  tatcatttatctagaaatgaagaatacattaaaacagctttgtatttcatatgttcttgt 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  tatcatttatctagaaatgaagaatacattaaaacagctttgtatttcatatgttcttgt 636

                                                                        
Query: 560  gggggattgaggaggaaggctgttgaattctgttggccatatttaggaaaagactaagta 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 635  gggggattgaggaggaaggctgttgaattctgttggccatatttaggaaaagac----ta 580

                                                    
Query: 620  tttactggctgaatatttagcttagtgggagcactaacta 659
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 579  tttactggctgaatatttagcttagtgggagcactaacta 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1055
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1045
Effective search space:   678205
Effective search space used:   678205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)