BAC Information

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BAC

Clone NameMSMg01-509D01
Chromosome7 (Build37)
Map Location 14,465,545 - 14,466,115
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627
Downstream geneEG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509D01.T7 (MSMg01no509_d01.b1)MSMg01-509D01.TJ (MSMg01no509_d01.g1)
ACCAG582926AG582927
length735746
length of high quality
(start - end)
651 (85 - 735)571 (80 - 650)
definitionCHROMAT_FILE: MSMg01no509_d01.b1 PHD_FILE: MSMg01no509_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:21 2005CHROMAT_FILE: MSMg01no509_d01.g1 PHD_FILE: MSMg01no509_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGCACTTATCCATCAGGGCCTGGACTTCTTTTGGTTGGG
AGATTTTTAATGACTTCTTTTATATCCTTGTGTGATATGGGCCTGTTTAA
ATAGTTTAACTACTCTTGATTAAACTGTGGTATGTGGTATCTGTCTATAA
AAACTTCCATTTCTTTTAGATTTTTCAGTTTTGTTGAGTATAGGCTTTTA
GAGTAGGATCTGATGTTTTGTTTTGTTTTTAAATTGCTCATTTCTGTTGT
TATGCCTCCCTTTTCATTTCTCATTTTGTTGATTTGGACACTAACTCTTG
CCCCTTTAATTAGTTTGGCTAGGGGTTTATTCTCTTCCTGATTCTCTCAA
AGAAACAGCTTCTGGTTTTGTTGATTCTTTGTATTGTTTTCTTTGTGTTT
GGTTGATTTTTGTCCCTGATTTTGACTGTTTTCTGCCTTCTATTCGGCTC
AAGTGAGTATGCTTCTTTTTGTTCTAGAGCTCACAGGTGATCAGTTAAAT
TGTTAGCTTAAGATCACTCCAATTTCTTTAGCAGGGCAAATAATACAATG
AACTTTCCTCTTATCACTGCTTCCATTGCATCCCTTAAGATTGGGTATGA
TGTGTCAACATTTTCATGAAATTCCAGTAAGTCTTTAATTTCTTTCTTTA
TTTTTCCCTGACCAAGTTATCATTGAGTACAGTTG
CCTTCCGATTAACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCATTGGATTAATGTGAGA
AGGGGAATACACCATCAGAGATGGTATTCACAACTCCAGAAAGTTTCATT
TCTTTCCCTCATACTTTATTTTTTTATTCACATTACATCCCAATTGCAGC
CCCTCCCTTCTCTCTTCCTATCCTAGTCTTGCCCTGAAAATGTGGACCCT
ACAGCTACTATCCATTTGTTGTGGATTGCCCTGGTGCTGTTTGTATTTTG
ATGCTAATTCTACTTACCCAAGAGGAGTCTGCCTGGGACAAGGAGTTGAA
TACTCTGATGACTTCAGGTGAAATGTCCTCTAATGAATAAAGATTTCAAG
GAATCAACCCCTGGGTGAATAGGCAGAACTTCCAGGTTGGAGAAAGGAAG
AGGAGAAGCAGGAGAGAGGTCTTTTGAATGGGAGAGTGGATGGAGGACAA
ATGTAGGTACCAAAGGCCCTAGGTTCATTTGGTAGATCAACTGGGATCCA
CTACCAGAAGATATGTAACTCAGAAGAGCTTACACATTAGAAAACTAGCT
GCTGCACCCAGCGATTGTGTTACCTGTTAATTCTAAATTAAGTTTCTGTG
GTGTTTTCTTAACATGGTGACTCAACTGGGTTCTAGAGAGAAAAGTACTG
CAGCAAATTACGGGTTTGTGAGAAGTGCACCCCACCTAGCTGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_d01.g1 MSMg01no509_d01.g1 CHROMAT_FILE:
MSMg01no509_d01.g1 PHD_FILE: MSMg01no509_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:21 2005
         (571 letters)



>mm_chr7_14465345_14466315
          Length = 971

 Score = 1065 bits (551), Expect = 0.0
 Identities = 566/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcattggattaatgtgagaaggggaatacaccatcagagatggtattcacaactccag 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 cctcattagattaatgtgagaaggggaatacaccatcagagatggtattcacacctccag 260

                                                                       
Query: 61  aaagtttcatttctttccctcatactttatttttttattcacattacatcccaattgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtttcatttctttccctcatactttatttttttattcacattacatcccaattgcag 320

                                                                       
Query: 121 cccctcccttctctcttcctatcctagtcttgccctgaaaatgtggaccctacagctact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccctcccttctctcttcctatcctagtcttgccctgaaaatgtggaccctacagctact 380

                                                                       
Query: 181 atccatttgttgtggattgccctggtgctgtttgtattttgatgctaattctacttaccc 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 atccatttgttgtggattgccctgttgctgtttgtattttgatgctaattctacttaccc 440

                                                                       
Query: 241 aagaggagtctgcctgggacaaggagttgaatactctgatgacttcaggtgaaatgtcct 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 aagaggagtctgcctgggacaaggagttaaatactctgatgacttcaggtgaaatgtcct 500

                                                                       
Query: 301 ctaatgaataaagatttcaaggaatcaacccctgggtgaataggcagaacttccaggttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaatgaataaagatttcaaggaatcaacccctgggtgaataggcagaacttccaggttg 560

                                                                       
Query: 361 gagaaaggaagaggagaagcaggagagaggtcttttgaatgggagagtggatggaggaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaaaggaagaggagaagcaggagagaggtcttttgaatgggagagtggatggaggaca 620

                                                                       
Query: 421 aatgtaggtaccaaaggccctaggttcatttggtagatcaactgggatccactaccagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgtaggtaccaaaggccctaggttcatttggtagatcaactgggatccactaccagaa 680

                                                                       
Query: 481 gatatgtaactcagaagagcttacacattagaaaactagctgctgcacccagcgattgtg 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 gatatgtaactcagaagagcttacacattagaaaactagctggtgcacccagcgattgtg 740

                                          
Query: 541 ttacctgttaattctaaattaagtttctgtg 571
           |||||||||||||||||||||||||||||||
Sbjct: 741 ttacctgttaattctaaattaagtttctgtg 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)