BAC Information

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BAC

Clone NameMSMg01-509I10
Chromosome7 (Build37)
Map Location 93,949,488 - 93,950,066
singlet/doubletsinglet
Overlap geneEG546983
Upstream geneEG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1
Downstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509I10.T7 (MSMg01no509_i10.b1)MSMg01-509I10.TJ (MSMg01no509_i10.g1)
ACCAG583181AG583182
length757759
length of high quality
(start - end)
415 (327 - 741)578 (76 - 653)
definitionCHROMAT_FILE: MSMg01no509_i10.b1 PHD_FILE: MSMg01no509_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:47 2005CHROMAT_FILE: MSMg01no509_i10.g1 PHD_FILE: MSMg01no509_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCTCATAAATTGCGGCCGCAAAACGAATCACAATCGAAATAGGATCCGC
GGAATTCCATCTTGGCCAATATGTCCTAATTAAGGGCTGTGTTCTAAGAG
TCTTTGTACTCAGGAGGATGCCAATGACTTTGAGGAAAGAGTACAAGACT
AGTGACTGTTTAAAGGCTAGATGGGTATTTTACTAAACTGAAGGCTTGTA
CAATTAGTTATAGATAGGAATATTTGATCGACGTATCTGTAAGATTTGGA
TATTTTTAAGTGAGCAACACATAGCTTCATTCTCATTTTAGAGTGAAGAA
CAATGCCTCGGTAAGTATACTTATACCATGGTTGTTACGTTGACCTTCAC
CTCTTATTTACTGGGGAATTCTCCAGCAACCCCTTGCTTCAGTTTGAAAG
TTTAGGTAGAAAAGGTAAAAGGAATTCCATCTACAAGTATGGAATATTGA
GGAAAAAATATATGCCATATTTTTACCCAAGATACAACCAGTAATTTCCT
TAAGAGAATGTGTAAAGACAGTTTATTACTTTAAGAGAAAAGCAATCACA
GAAAAATCCTGCTATTTTTTGAGGTTTCATTTTAAATGTGATAACAATAC
CATGGAGTATTGTATACTACAGGGTCATACATATATCATAAAAGCTAATC
ATTGTGTTTCTGTACCACTTGACTAACACTTCATACTTCCAAATATCTTT
TCTTTATTCCATAGGNACAAAATCCATACAAAGTTTTGTAAACAAATTCA
TTATTTN
NTACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGGNCATCATCTGTAATGATGAC
TCCTACCCAGTTCCATCTGAAGTGAACTGCTAGGGACACCATGGCTAATG
GTAGAGATGTGTCCTTGGGAGTCATCTGGTAGAGATGAGGAAACTGTTCC
TGGTCACTTAGAAGGAGATGAAAATAACCACAGTAAAGCTGAAAGATATT
GACCAGAAGCATCATTATGGAGAAATGGAATGCATAGAGCTCAGTCTATG
CATAGATCTTAGTGTGCTTTTTTCATGCTAGAAGTGTGAGAAAGTGTGGA
TTCTTATTATTATTAAAATCATATCCAACTTCTTGTGAATTGCTATACAA
GTAGAGATAAACAAAGTATTTGGTAAAACCTTTTACATTATGCTTTCTCT
CCTGCCCAACTGTCATAAAGATGTTGTGTTTGCCAAAGAAAGTATCTAGA
TATAAATGAATTCTCTGTCTTTTAATCAGCCTTGGTACTCAGAAATCCAT
ACTGTGGTAAGATAGTATTTCAATAAATGTAACCCTCCCTAACTTACCTC
TGGAGTTCTAGAGAAGTACAGAAATGGTCCAAGTATGTAAGATGTTATCC
ATATAGGCCCCGTAAGTACAATTAAATATCTTCTCTGANTTTTACAGTAG
TAATTAGGAATAATTTTCTTTTTTTTCAAGGGACAAACTCTTTCCCCATT
ATCCTCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_i10.g1 MSMg01no509_i10.g1 CHROMAT_FILE:
MSMg01no509_i10.g1 PHD_FILE: MSMg01no509_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:47 2005
         (578 letters)



>mm_chr7_93949288_93950266
          Length = 979

 Score = 1058 bits (547), Expect = 0.0
 Identities = 570/584 (97%), Gaps = 11/584 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggncatcatctgtaatgatgactcctacccagttccatctgaagtgaactgctaggg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 catggtcatcatctgtaatgatgactcctacccagttccatctgaagtgaactgctaggg 720

                                                                       
Query: 61  acaccatggctaatggtagagatgtgtccttgggagtcatctggtagagatgaggaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 acaccatggctaatggtagagatgtgtccttgggagtcatctggtagagatgaggaaact 660

                                                                       
Query: 121 gttcctggtcacttagaaggagatgaaaataaccacagtaaagctgaaagatattgacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gttcctggtcacttagaaggagatgaaaataaccacagtaaagctgaaagatattgacca 600

                                                                       
Query: 181 gaagcatcattatggagaaatggaatgcatagagctcagtctatgcatagatcttagtgt 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gaagcatcattatgaagaaatggaatgcatagagctcagtctatgcatagatcttagtgt 540

                                                                       
Query: 241 gctttttt------catgctagaagtgtgagaaagtgtggattcttattattattaaaat 294
           ||     |      ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gc-----tagaacacatgctagaagtgtgagaaagtgtggattcttattattattaaaat 485

                                                                       
Query: 295 catatccaacttcttgtgaattgctatacaagtagagataaacaaagtatttggtaaaac 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 catatccaacttcttgtgaattgctatacaagtagagataaacaaagtatttggtaaaac 425

                                                                       
Query: 355 cttttacattatgctttctctcctgcccaactgtcataaagatgttgtgtttgccaaaga 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttttacattatgctttctctcctgcccaactgtcataaagatgttgtgtttgccaaaga 365

                                                                       
Query: 415 aagtatctagatataaatgaattctctgtcttttaatcagccttggtactcagaaatcca 474
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 364 aagtatctagatataaatgaattctcggtcttttaatcagccttggtactcagaaatcca 305

                                                                       
Query: 475 tactgtggtaagatagtatttcaataaatgtaaccctccctaacttacctctggagttct 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tactgtggtaagatagtatttcaataaatgtaaccctccctaacttacctctggagttct 245

                                                       
Query: 535 agagaagtacagaaatggtccaagtatgtaagatgttatccata 578
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agagaagtacagaaatggtccaagtatgtaagatgttatccata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space:   550392
Effective search space used:   550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)