Query= MSMg01no509_k19.b1 MSMg01no509_k19.b1 CHROMAT_FILE:
MSMg01no509_k19.b1 PHD_FILE: MSMg01no509_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:59 2005
(699 letters)
>mm_chr7_123110027_123111126
Length = 1100
Score = 1299 bits (672), Expect = 0.0
Identities = 693/704 (98%), Gaps = 9/704 (1%)
Strand = Plus / Plus
Query: 1 tagaggtgaaccagtaaaaggtgactcagccaagcttgggaagggacatctgatggcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaggtgaaccagtaaaaggtgactcagccaagcttgggaagggacatctgatggcctc 260
Query: 61 cacctgaaagagctaccttaagggagaaagactaagctactaaaacctaaaaacacagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctgaaagagctaccttaagggagaaagactaagctactaaaacctaaaaacacagga 320
Query: 121 acttaaccaggttccaaaataaccttcccagacaaccatggcttctccatcactctgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttaaccaggttccaaaataaccttcccagacaaccatggcttctccatcactctgttt 380
Query: 181 ttctcagaacagctgtctaaaatgagttccttacattaaagacaaaagggagaagattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctcagaacagctgtctaaaatgagttccttacattaaagacaaaagggagaagattaa 440
Query: 241 ggttct----tttttgtgcctctgaaaaacctattatgagtgtctcaccatcgtcagaat 296
|||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttctgaact----gtgcctctgaaaaacctattatgagtgtctcaccatcgtcagaat 496
Query: 297 acattcagggg-aaagcaagcaagggaaatcggaactcagcaaagcatcatactgcaaaa 355
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acattcagggggaaagcaagcaagggaaatcggaactcagcaaagcatcatactgcaaaa 556
Query: 356 tgtctcattttcagaactgcagattgcacatgtggtctttttttgtcccaacttctgtga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgtctcattttcagaactgcagattgcacatgtggtctttttttgtcccaacttctgtga 616
Query: 416 accaaatgcttgcctaaggacaacaaaaccatcatcttctaaatgacgtgtgccaggaaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 accaaatgcttgcctaaggacaacaaaaccatcatcttctaaatgacgtgtgccaggaaa 676
Query: 476 gcatgttgtcacggtaggtacgagatgtgcataaagcagtagcttgcaaaccaagtatca 535
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcatgttgtcatggtaggtacgagatgtgcataaagcagtagcttgcaaaccaagtatca 736
Query: 536 aagcaagcaaatacagccactcatgatagagaattcacatctctctgcgatatgatattt 595
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 737 aagcaagcaaatacagccactcatgatagagaattcacatctctctgcaatatgatattt 796
Query: 596 taactccgcaagaaaaacagcagtacacaacatcttttgatcagcagccagttacaaatg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 taactccgcaagaaaaacagcagtacacaacatcttttgatcagcagccagttacaaatg 856
Query: 656 gattgcttcagagtcagtattacatcactctgtgttcatgacta 699
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gattgcttcagagtcagtattacatcactctgtgttcatgacta 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1100
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1090
Effective search space: 751010
Effective search space used: 751010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_k19.g1 MSMg01no509_k19.g1 CHROMAT_FILE:
MSMg01no509_k19.g1 PHD_FILE: MSMg01no509_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:59 2005
(566 letters)
>mm_chr7_123272512_123273477
Length = 966
Score = 1071 bits (554), Expect = 0.0
Identities = 563/566 (99%)
Strand = Plus / Minus
Query: 1 ttccttatgcaaatgaggcatccccggcacctttgccccagccagtgatgcacactcaac 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 885 ttccttatgcaaatgaggcatccccggcacctttggcccagccagtgatgcacactcaac 826
Query: 61 cgcaaagcctttacccactcctcagagggttaaatagcctctgtttctccccaattaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 cgcaaagcctttacccactcctcagagggttaaatagcctctgtttctccccaattaaac 766
Query: 121 aagcactcagtgaagcctgtctcccttcccctgaggtctccatcaccccgtcaccatcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aagcactcagtgaagcctgtctcccttcccctgaggtctccatcaccccgtcaccatcat 706
Query: 181 gctctcaggccaccagtctgatggtgggcgactatgctgttaagggagggggaacagggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gctctcaggccaccagtctgatggtgggcgactatgctgttaagggagggggaacagggt 646
Query: 241 gggaatgacatctgtagactttgatgcttcctcacagggtaggaagggtgggaaaacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gggaatgacatctgtagactttgatgcttcctcacagggtaggaagggtgggaaaacatg 586
Query: 301 tctcagaccagagcatctgcgcttaccctccaccctgccacctgatcctctccccagctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tctcagaccagagcatctgcgcttaccctccaccctgccacctgatcctctccccagctg 526
Query: 361 tctaaaccagagaaggtctccatccccgagcgatatgtggaactagaccccgaggaacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tctaaaccagagaaggtctccatccccgagcgatatgtggaactagaccccgaggaacca 466
Query: 421 cccagcctggaggagctgcaggcacggtaccaaaaggcggagaagatacggaatatcctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cccagcctggaggagctgcaggcacggtaccaaaaggcggagaagatacggaatatcctt 406
Query: 481 gcccggtcaaggtcagcccctacttgctcaaatctagaagtctcacagactccatctcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gcccggtcaaggtcagcccctacttgctcaaatctagaagtctcacagactccatctcag 346
Query: 541 gtggtagctcagccatgacaagaccc 566
||| |||||||||||||| |||||||
Sbjct: 345 gtgatagctcagccatgagaagaccc 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
