BAC Information

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BAC

Clone NameMSMg01-509M07
Chromosome7 (Build37)
Map Location 18,399,750 - 18,400,204
singlet/doubletsinglet
Overlap geneCeacam14
Upstream geneFkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1
Downstream geneEG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509M07.T7 (MSMg01no509_m07.b1)MSMg01-509M07.TJ (MSMg01no509_m07.g1)
ACCAG583366AG583367
length750756
length of high quality
(start - end)
323 (326 - 648)462 (79 - 540)
definitionCHROMAT_FILE: MSMg01no509_m07.b1 PHD_FILE: MSMg01no509_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:07 2005CHROMAT_FILE: MSMg01no509_m07.g1 PHD_FILE: MSMg01no509_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGNGAGTAGCGGCG
GAATTCANAACACTTCAACAGAGGGATGGNGGNAATGAAGTGTTCCCGTA
AAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGC
TGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGCCTT
GAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAAT
TTTTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACA
GTCTATCAGAAGTAATGGGGTAAATAGCTTTACAAGGTATGTTTGGCCTT
GAACTTTCTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCA
AGCGGTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTAT
CAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACA
CAAAATAAGTATACAGGCCTTTCCACGGGTCTTGAACCTGAGGAAAAGTT
TAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAAGAAAAGAAAA
AAGATCAATTAGCGGAGGTCTCTAGGAGAAGGAGCCTATACTCATCACTA
TATGAGCTCAAGGAGCCAGTTCTTAATAGTTCTGAATCAGATGAAAAGGC
TATTAGGGCCTGGAAGGCGCTCTCCCAAGCAGGTGAAGCCACTGGACAAN

ACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTACACAGTAAGTAATTTT
TTGTGTGAACTCTGTTGTTGGGTGGGGTCTAGTCCATTGAACATTCTGAA
AAATGTCAGGCCTAAGCTGGATCTCCTGACCCTCTGCATTGTGTCTCTAT
GTTGTTGTTTGAGGATTTAGTGCAGGACATGCATTTGGGGTACAAAGTTT
CATGGAATGGAATTCCTCACTTGGCTGCACCTGCAGAGAGGTGGACTTGT
GCTGAGTAACTCAGACAAGGATGTCAGCCTCAACCCAGACCCTTGGACCT
CTCACCAAAAACGTGCACACGAGTTGAGGAAGACATGAGGAAACTATGGG
ATCTTCAGTGACCTTGGATCCAGACCTCTGTCCTAGACTCAGCTCAGAGT
GACAGAGGACAGAAGAGCTAATTTCAGAGCAACAAGGCTCAGGGGGCCCT
GCTGGAGGTAAAGGAGTTCTGCAAGGATGGAGTACTGAGCAGACATCAGA
GGCTGTAGAGAAGGCAGTGAATGCTGAGCCTTGTAGACAGTCAAGGGGAA
AGTCCCATACAGAAGTTCATGGGTACCAAGTGCATGAAATTTGTGTGCTG
ACCTCCACCGAGTAAGATAGATACACCCTCACTCACAGACCAAGGCTGAT
TCATACCTGCTCAGGGCTCAGAGATATTTCTTCCTACTAAATGCAGAAGA
AGACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_m07.g1 MSMg01no509_m07.g1 CHROMAT_FILE:
MSMg01no509_m07.g1 PHD_FILE: MSMg01no509_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:07 2005
         (462 letters)



>mm_chr7_18399550_18400411
          Length = 862

 Score =  824 bits (426), Expect = 0.0
 Identities = 450/462 (97%), Gaps = 7/462 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtacacagtaagtaattttttgtgtgaactctgttgttgggtggggtctagtccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtacacagtaagtaattttttgtgtgaactctgttgttgggtggggtctagtccatt 260

                                                                       
Query: 61  gaacattctgaaaaatgtcaggcctaagctggatctcctgaccctctgcattgtgtctct 120
           ||||||||||||||||||||||||||| |||||||||||||       |||| |||||||
Sbjct: 261 gaacattctgaaaaatgtcaggcctaaactggatctcctga-------cattttgtctct 313

                                                                       
Query: 121 atgttgttgtttgaggatttagtgcaggacatgcatttggggtacaaagtttcatggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atgttgttgtttgaggatttagtgcaggacatgcatttggggtacaaagtttcatggaat 373

                                                                       
Query: 181 ggaattcctcacttggctgcacctgcagagaggtggacttgtgctgagtaactcagacaa 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 374 ggaattcctcacttggctgcacctgcagagaggtagacttgtgctgagtaactcagacaa 433

                                                                       
Query: 241 ggatgtcagcctcaacccagacccttggacctctcaccaaaaacgtgcacacgagttgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggatgtcagcctcaacccagacccttggacctctcaccaaaaacgtgcacacgagttgag 493

                                                                       
Query: 301 gaagacatgaggaaactatgggatcttcagtgaccttggatccagacctctgtcctagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaagacatgaggaaactatgggatcttcagtgaccttggatccagacctctgtcctagac 553

                                                                       
Query: 361 tcagctcagagtgacagaggacagaagagctaatttcagagcaacaaggctcagggggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 554 tcagctcagagtgacagaggacagaagagctaatttcagagcaacaaggcttagggggcc 613

                                                     
Query: 421 ctgctggaggtaaaggagttctgcaaggatggagtactgagc 462
           |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 614 ctgctggaggtaaaggagttcttcaaggatggagtactgagc 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)