BAC Information

Click to search

BAC

Clone NameMSMg01-510A20
Chromosome7 (Build37)
Map Location 88,284,071 - 88,360,047
singlet/doubletdoublet
Overlap geneSlc28a1, EG623286, LOC100043130, Pde8a
Upstream geneSema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3
Downstream geneEG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510A20.T7 (MSMg01no510_a20.b1)MSMg01-510A20.TJ (MSMg01no510_a20.g1)
ACCAG583579AG583580
length749749
length of high quality
(start - end)		693 (45 - 737)567 (82 - 648)
definitionCHROMAT_FILE: MSMg01no510_a20.b1 PHD_FILE: MSMg01no510_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:31 2005CHROMAT_FILE: MSMg01no510_a20.g1 PHD_FILE: MSMg01no510_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,284,071 - 88,284,756)(88,359,481 - 88,360,047)
sequence
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATCCTCTCCCGCCAGGCTGGAGGGATGGAGAATGATGGGCTTGG
ACCAGAGGAAGATAGGAGGGAAAGCTAATTCCAACTGCTTATGAAGGAAG
ACAAGCCGAGGACAGGCCGAGAGGCAGCAGCCGCACAGAAACATTCCAGA
AGTACAATATGTCCCAAACCCTTTTCCAGTGAACTCTAGACCCTGGCGTG
CTACCAAATGTTACTTGGACAAAAAAGTCTCTAGTTAAGTAACTGAAAAA
TACCAGGCTAGACATTATGGTGAATTAATTTTTTCATTAATTTAATTATT
CATCACTTTATCAAAGCCCTTTCCCTCCTCTCCTCCCAGTCCCATCCTTA
CAAGTCCTTCTCCCAACCACACTTTACCTTTCACCTCAGAGAAGGAGAAG
CCCCTTTTGGGTACTACCCCACCCTGGGACATCTAGTCCCAGCAGAATTA
AGCACAGCTTCTCCCACTGAGGCCCAACCAGGCAGTACAGTTAGGGGAAG
GGGATCCAATGGCGGGCAACAGAGTCAGAGACAGCCCCTGTTCCAGTTGT
TAGGAGATCCACATGAAGTCCCAGCTGCACATCTGCTACAAATGTGTAGG
GGGCCCAGGTCTAGTCCCTGCATGTTCTTTGATTGGTGGTTTAGTCTCTG
TGAGTCCCCATGGGCCCAGGTTAGTTGACTCTGTAGGTCTTGTGGTATT

AATGCTAGGTGAGGTCTGGNGGNCGCCTGGTTTTCAAAAAGAGGTNGAAC
NATAGAAGGATCCCAGAAAAACGGCTGNAGGAAATCAGAACACAGTTGAA
TTTTCACTTAGAGCAATTGGTAGGGCAGGGTAAGCACTCCAGTGTGCAAA
GCTGAACAACATCGTCTCTTTCCAACAAAAAAGGATTATTTCTATGACTG
CTAGAAAGTTAAGACAGTTAAGTAAGTCAACTACATCGTTCAAATCTGGT
AGGGTGTGCAGTACCCAGTAAGCAATTTTTAAAAATTGCAAAATACTTAA
AACTTCCTAGTAACGATTAGTCNATGTTCAAACACTGCAGCCCAGCATAC
CAGTTTGTTTTACAACGCCTGAGATGTCACTCCAAAATCCCAAATGTAAG
TGAGAAGCTGCTGCGGGTGCCTCTGTGAACTTTTATCTTTCCTTCAGAAA
ACCTTCGCCCTGGAAACTTTTGATAAAAGCTGAGGCAAAAGGCGCTGGAG
AAGCCACGCAACAAACAACAAAACAGAAAACCCTGCAAGTCCCAGGCAGA
CTGCCTCCATACAAAATTAACTTCGCCCTGCTGAATCCTTCGAGGGTCAC
GGTCACGTCTCCAGTAGTATTTTTAATTACACAGGCTTTAAATACCACAC
GTATGCTAACAAACCTGAACTTCAGATAAAGCGTGCAGTGAAGCCAAACC
TATGTTCCAGGTTACATTTCAATGGCCCCCAAAAAAGTGGAAAAGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_a20.b1 MSMg01no510_a20.b1 CHROMAT_FILE:
MSMg01no510_a20.b1 PHD_FILE: MSMg01no510_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:31 2005
         (693 letters)



>mm_chr7_88283867_88284959
          Length = 1093

 Score = 1212 bits (627), Expect = 0.0
 Identities = 672/687 (97%), Gaps = 3/687 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatcctctccc-gccaggctggagggatggagaatgatgggcttggaccagag 63
           |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatcctc-cacagccaggctggagggatggagaatgatgggcttggaccagag 263

                                                                       
Query: 64  gaagataggagggaaagctaattccaactgcttatgaaggaagacaagccgaggacaggc 123
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 gaagataggagggaaagctaattccaactgcttatgaaggaagactagccgaggacaggc 323

                                                                       
Query: 124 cgagaggcagcagccgcacagaaacattccagaagtacaatatgtcccaaacccttttcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgagaggcagcagccgcacagaaacattccagaagtacaatatgtcccaaacccttttcc 383

                                                                       
Query: 184 agtgaactctagaccctggcgtgctaccaaatgttacttggacaaaaaagtctctagtta 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 agtgaactctagaccctggcgtgctaccaaatgttacttggacaagaaagtctctagtta 443

                                                                       
Query: 244 agtaactgaaaaataccaggctagacattatggtgaattaattttttcattaatttaatt 303
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 444 agtaactgaaaaataccaggctagatattatagtgaattaattttttcattaatttaatt 503

                                                                       
Query: 304 attcat-cactttatcaaagccctttccctcctctcctcccagtcccatccttacaagtc 362
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 attcattcactttatcaaagccctttccctcctctcctccccgtcccatccttacaagtc 563

                                                                       
Query: 363 cttctcccaaccacactttacctttcacctcagagaaggagaagccccttttgggtacta 422
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttctcccaaccacactttacctttcacctcagagaaggagaagccccttttgggtacta 623

                                                                       
Query: 423 ccccaccctgggacatctagtcccagcagaattaagcacagcttctcccactgaggccca 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 624 ccccaccctgggacatctagtcccagcagaattaagcacagcttctcccactgaggccta 683

                                                                       
Query: 483 accaggcagtacagttaggggaaggggatccaatggcgggcaacagagtcagagacagcc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accaggcagtacagttaggggaaggggatccaatggcgggcaacagagtcagagacagcc 743

                                                                       
Query: 543 cctgttccagttgttaggagatccacatgaagtcccagctgcacatctgctacaaatgtg 602
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 744 cctgttccagttgttaggagatccacatgaagacccagctgcacatctgctacaaatgtg 803

                                                                       
Query: 603 tagggggcccaggtctagtccctgcatgttctttgattggtggtttagtctctgtgagtc 662
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |
Sbjct: 804 tagggggcccaggtctagtccctgcatgttctttgattggtggttcagtctctgtgaacc 863

                                      
Query: 663 cccatgggcccaggttagttgactctg 689
           |||||||||||||||||||||||||||
Sbjct: 864 cccatgggcccaggttagttgactctg 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no510_a20.g1 MSMg01no510_a20.g1 CHROMAT_FILE:
MSMg01no510_a20.g1 PHD_FILE: MSMg01no510_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:32 2005
         (567 letters)



>mm_chr7_88359280_88360247
          Length = 968

 Score = 1044 bits (540), Expect = 0.0
 Identities = 560/567 (98%), Gaps = 1/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   aatcagaacacagttgaattttcacttagagcaattggtagggcagggtaagcactccag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aatcagaacacagttgaattttcacttagagcaattggtagggcagggtaagcactccag 709

                                                                       
Query: 62  tgtgcaaagctgaacaacatcgtctctttccaacaaaaaaggattatttctatgactgct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtgcaaagctgaacaacatcgtctctttccaacaaaaaaggattatttctatgactgct 649

                                                                       
Query: 122 agaaagttaagacagttaagtaagtcaactacatcgttcaaatctggtagggtgtgcagt 181
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 648 agaaagttaagacagttaagtaagtcaactacatcgttcaaatctgggagggtgtgcagt 589

                                                                       
Query: 182 acccagtaagcaatttttaaaaattgcaaaatacttaaaacttcctagtaacgattagtc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||
Sbjct: 588 acccagtaagcaatttttaaaaattgcaaaatacttaaaacttcctagtaaagaggagtc 529

                                                                       
Query: 242 natgttcaaacactgcagcccagcataccagtttgttttacaacgcctgagatgtcactc 301
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tatgttcaaacactgcagcccagcataccagtttgttttacaacgcctgagatgtcactc 469

                                                                       
Query: 302 caaaatcccaaatgtaagtgagaagctgctgcgggtgcctctgtgaacttttatctttcc 361
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaaatcccaaatgtaagtgggaagctgctgcgggtgcctctgtgaacttttatctttcc 409

                                                                       
Query: 362 ttcagaaaaccttcgccctggaaacttttgataaaagctgaggcaaaaggcgctggagaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttcagaaaaccttcgccctggaaacttttgataaaagctgaggcaaaaggcgctggagaa 349

                                                                       
Query: 422 gccacgcaacaaacaacaaaacagaaaaccctgcaagtcccaggcagactgcctccatac 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gccacgcaacaaacaacaaaacagaaaaccctgcaagtcccaggcagactgcctccatac 289

                                                                       
Query: 482 aaaattaacttcgccctgctgaatccttcgagggtcacggtcacgtctccagtagtattt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aaaattaacttcgccctgctgaatccttcgagggtcacggtcacgtctccagtagtattt 229

                                      
Query: 542 t-taattacacaggctttaaataccac 567
           | |||||||||||||||||||||||||
Sbjct: 228 tctaattacacaggctttaaataccac 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space:   533606
Effective search space used:   533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |