BAC Information

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BAC

Clone NameMSMg01-510B04
Chromosome7 (Build37)
Map Location 69,337,327 - 69,512,514
singlet/doubletdoublet
Overlap geneNdn
Upstream geneD0Kist2, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream geneMagel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510B04.T7 (MSMg01no510_b04.b1)MSMg01-510B04.TJ (MSMg01no510_b04.g1)
ACCAG583595AG583596
length739748
length of high quality
(start - end)		690 (50 - 739)668 (79 - 746)
definitionCHROMAT_FILE: MSMg01no510_b04.b1 PHD_FILE: MSMg01no510_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:33 2005CHROMAT_FILE: MSMg01no510_b04.g1 PHD_FILE: MSMg01no510_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,511,829 - 69,512,514)(69,337,327 - 69,337,994)
sequence
NCCACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTCCTCTTACACAGAAAGGGTCTGTCTTTTTGTCTATTCA
AGCCTTCATCTGGCTGAGTACAGCCATTCTGAATGATTTATTCATTCCGC
TAAATTAAATGTGACTTTCATCAAAAATATTCCCATCGAAACCCTATGAC
TATGCTTGATTGAAGATTCAGGTGCCCCATCATCCAGATAAATTAATTTG
AAGATTTAATTATTATATCCAGGCTCTGAGTTTTAAAAATGTATTTACTG
AGTTCTGCGTTTTTATGGGCTATTTATTTATTAACACTTAGTGTTTTCCC
TATCAGGAATAAATTAACTGCATTGATTTATGTTTTCTGTATGACATTTG
TTTTTATTTCCCAGTTTGGATTAATAAGGTTTATAGAGTTCAATTTTTCA
TTCTGTATTAACTGTTACATCATCTTCTTTTCATCATGGATGCAGTAACA
CTCACAGTGCTATCTTTTACTTTCTTTGTTTAGTGACTTTATGCACCAAG
GCTAGCTACAATCCTGCCTTTCTCGGTCTTTAATAATTGTACCTGTGTCC
ACTGCCTTTCAGGGCTTGAAATATTCCTCTTTAATTCAATACTGCGTATG
TCAAGATTCATGAATAAGGTGCTTGCAACAGCGTTATTCCAGTCAAACTG
CTCATGTCCTTTTTGTTCTCATTGTCATGCATTTTCCGN

NTTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGACAATAATCCAGCAAGA
TTTAACCCATTCCCACTACTGGAGGTTTACTTGGTGGCATGCCTAGCTAA
GGAATTGTCTTCTTTAAATATGGTGAGTACTTCATAATTATTATCATTTG
TATAAATATTATAGAAAGCTTCTAGGGCAATAGGCACACACAAGACTTTC
AATATTTCACACCACTTACAATTGCAGCATTGATTAAGGATGTGAAAAAT
GTCCTACTCCTCATCAGGAATATATTTGTAGTTTATATCTGTAAGGAAAG
AGAGAATCATGTTTCCCCAGTGGAGTTATTGAGAAAATCAACCACAATCT
AGGACTGACTTCATTCCCAGGAATAGTAGGCCAAAACAAGATGAAATCCA
TGTTTTATCTGTTTGCTATTTGATTATGCACTGTTGTGATGGGCTCTGTT
CGATTTGGTTTCTTAGATTTTCTGTTTTTTTGTATATTCATATTTTCTTA
GTGATAGAATATATATAACAATAAATTAGTTGGGTAGGGAGATAGGAAGA
ATCTTAGTGGCACTGAGAGAGAAAAATAATCAAAATATACTATAGATAAT
TAATAAAGGATTAAATATATAGTATGTATAAATAAGTATGATTCTATTCA
TTAAATAAGCAAAAAACAGTTGTTTCCAGAATACCCTTTCTGGAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_b04.b1 MSMg01no510_b04.b1 CHROMAT_FILE:
MSMg01no510_b04.b1 PHD_FILE: MSMg01no510_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:33 2005
         (690 letters)



>mm_chr7_69511506_69512595
          Length = 1090

 Score = 1280 bits (662), Expect = 0.0
 Identities = 680/686 (99%)
 Strand = Plus / Minus

                                                                        
Query: 4    ggaattctctcctcttacacagaaagggtctgtctttttgtctattcaagccttcatctg 63
            ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1009 ggaattctctcctcttaaacagaaagggtttgtctttttgtctattcaagccttcatctg 950

                                                                        
Query: 64   gctgagtacagccattctgaatgatttattcattccgctaaattaaatgtgactttcatc 123
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  gcggagtacagccattctgaatgatttattcattccgctaaattaaatgtgactttcatc 890

                                                                        
Query: 124  aaaaatattcccatcgaaaccctatgactatgcttgattgaagattcaggtgccccatca 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  aaaaatattcccatcgaaaccctatgactatgcttgattgaagattcaggtgccccatca 830

                                                                        
Query: 184  tccagataaattaatttgaagatttaattattatatccaggctctgagttttaaaaatgt 243
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 829  tccagataaattaatttgaagatttaattattatacccaggctctgagttttaaaaatgt 770

                                                                        
Query: 244  atttactgagttctgcgtttttatgggctatttatttattaacacttagtgttttcccta 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  atttactgagttctgcgtttttatgggctatttatttattaacacttagtgttttcccta 710

                                                                        
Query: 304  tcaggaataaattaactgcattgatttatgttttctgtatgacatttgtttttatttccc 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  tcaggaataaattaactgcattgatttatgttttctgtatgacatttgtttttatttccc 650

                                                                        
Query: 364  agtttggattaataaggtttatagagttcaatttttcattctgtattaactgttacatca 423
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 649  agtttggattaataaggtttatagagtttaatttttcattctgtattaactgttacatca 590

                                                                        
Query: 424  tcttcttttcatcatggatgcagtaacactcacagtgctatcttttactttctttgttta 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  tcttcttttcatcatggatgcagtaacactcacagtgctatcttttactttctttgttta 530

                                                                        
Query: 484  gtgactttatgcaccaaggctagctacaatcctgcctttctcggtctttaataattgtac 543
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 529  gtgactttatgcaccaaggctagctacaatcctgccttactcggtctttaataattgtac 470

                                                                        
Query: 544  ctgtgtccactgcctttcagggcttgaaatattcctctttaattcaatactgcgtatgtc 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  ctgtgtccactgcctttcagggcttgaaatattcctctttaattcaatactgcgtatgtc 410

                                                                        
Query: 604  aagattcatgaataaggtgcttgcaacagcgttattccagtcaaactgctcatgtccttt 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409  aagattcatgaataaggtgcttgcaacagcgttattccagtcaaactgctcatgtccttt 350

                                      
Query: 664  ttgttctcattgtcatgcattttccg 689
            ||||||||||||||||||||||||||
Sbjct: 349  ttgttctcattgtcatgcattttccg 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no510_b04.g1 MSMg01no510_b04.g1 CHROMAT_FILE:
MSMg01no510_b04.g1 PHD_FILE: MSMg01no510_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:33 2005
         (668 letters)



>mm_chr7_69337127_69338194
          Length = 1068

 Score = 1152 bits (596), Expect = 0.0
 Identities = 650/668 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggacaataatccagcaagatttaacccattcccactactggaggtttacttggtggc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tttggacaataatccagcaagatttaacccatccccactactggaggtttacttggtggc 260

                                                                       
Query: 61  atgcctagctaaggaattgtcttctttaaatatggtgagtacttcataattattatcatt 120
           |  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 acacctagctaaggaattgtcttctttaattatggtgagtacttcataattattatcatt 320

                                                                       
Query: 121 tgtataaatattatagaaagcttctagggcaataggcacacacaagactttcaatatttc 180
           |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 321 tgtataaatattatagaaagcttctagggcaataggcacagaaaacactttcaatatttc 380

                                                                       
Query: 181 acaccacttacaattgcagcattgattaaggatgtgaaaaatgtcctactcctcatcagg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 acaccacttacaattgcagcattgactaaggatgtgaaaaatgtcctactcctcatcagg 440

                                                                       
Query: 241 aatatatttgtagtttatatctgtaaggaaagagagaatcatgtttccccagtggagtta 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 aatatatttgtagtttatatctgtaaggaaagggagaatcatgtttccccagtggagtta 500

                                                                       
Query: 301 ttgagaaaatcaaccacaatctaggactgacttcattcccaggaatagtaggccaaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgagaaaatcaaccacaatctaggactgacttcattcccaggaatagtaggccaaaaca 560

                                                                       
Query: 361 agatgaaatccatgttttatctgtttgctatttgattatgcactgttgtgatgggctctg 420
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 agatgaaatccatgttttatttgtttgctatttgattatgcactgttgtgatggactctg 620

                                                                       
Query: 421 ttcgatttggtttcttagattttctgtttttttgtatattcatattttcttagtgataga 480
           || |||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||
Sbjct: 621 tttgatttggtttcttagattttctgtttctttgcatattcacattttcttaatgataga 680

                                                                       
Query: 481 atatatataacaataaattagttgggtagggagataggaagaatcttagtggcactgaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatatataacaataaattagttgggtagggagataggaagaatcttagtggcactgaga 740

                                                                       
Query: 541 gagaaaaataatcaaaatatactatagataattaataaaggattaaatatatagtatgta 600
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagaaaaatagtcaaactatactatagataattaataaaggattaaatatatagtatgta 800

                                                                       
Query: 601 taaataagtatgattctattcattaaataagcaaaaaacagttgtttccagaataccctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaataagtatgattctattcattaaataagcaaaaaacagttgtttccagaataccctt 860

                   
Query: 661 tctggagt 668
           ||||||||
Sbjct: 861 tctggagt 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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