BAC Information

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BAC

Clone NameMSMg01-510C01
Chromosome7 (Build37)
Map Location 13,438,166 - 13,438,829
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110
Downstream geneZfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510C01.T7 (MSMg01no510_c01.b1)MSMg01-510C01.TJ (MSMg01no510_c01.g1)
ACCAG583637AG583638
length747747
length of high quality
(start - end)
275 (48 - 322)659 (79 - 737)
definitionCHROMAT_FILE: MSMg01no510_c01.b1 PHD_FILE: MSMg01no510_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:38 2005CHROMAT_FILE: MSMg01no510_c01.g1 PHD_FILE: MSMg01no510_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAAATTCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG
GTGTGCGCCACCATGCCCAGCTCAAAAAAAAAAAAAAAAAAAAATATATA
TATATATATATATATATATATTTTTTTTTTTTTTTTGAGACAGGGTTTCT
CTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCT
TGAACTCAAAAATATATTTTTAATGAACAAGCCAGACATAGTGACACACA
CCTTTAGTCCCAGCACTTGGGATGTTGGAGGCCACTGGTTTGCATAGTGA
GTTCTAAAACAGCCAGGGATGCATAGTGAGACTCTGTCTCGAAAATAAAT
AAATAAATAAGAACAAGCCTTGCTTGGCGAGATGGTTCACCAAAATCCCC
ATGGTGAAAAGACCAAAGCCTCCAGACAGTCCTCTGACCTCCACGTGTGT
CCTGTAGCATAAGTGCACACACACACCAATAAACAAGCGATAGGTTTTAA
ATGTGTATTATAAAGGGGGGATGGGAGCAAGAAAAAGAGGGTGCTCAATG
GTTAAAAGTGTTAGCTGCTTTTCAGATCCACTTCAAGAAGTTCACAGGGG
ATTTGATGCCCTCTGACCCCCTAGGGTATCTGAATACACATGGTGACACA
AACTCATACAGTCCCATTTACATATAATATATATATGAATGGCTCGG
GATGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGGAACCACTATAGGCC
AGCTAGCCACTGGGGGGGGGGGGAGCAGCATGGGTTACCAATGGCCAATC
AGTGTCTTCAACAAAGACCCTGTGCTGGTCATAAGCAGGTGGGGTCCAAT
TGACCTGGCGTTTTCCCAACTTGGAGAGGTGAGATAACATATCTAGGGTT
TTAAAGAGGATCTAAGGGCTTCCAGTGGGAGGAAAGGGTGAGTCCAGTTG
GGCCCACCTTCTCAATCATTATTTTTCCACCTTCTCAATCATTAGGTCCA
GCTGGCAGGGAAGAGAGTTCTGAGGCAGAGTTGGAAGTTCTATAAGGACC
TTAGTTTGTTTCCTATTACTGTGATAAAACAATACCAAAAGCAAATTGGG
GAGGAAAAGGTTTGTTTCATCTTACACATCCATCTTGAGCACAGTCCCTC
ATTGAGGGAAAGCCAAGGCTGAAAATCAAACAGGAACAAGAACTGAAATA
GGAGAGGGAAGAGTGCTGCTTACCAGCTTGCTCCTCGTGACTTGCTCAGC
TCCTTTCTTATAGAACTCAGGACCACTTGCTTAAGGGTGCAACTGTCCAC
ATTGGGCTGGGCTCCCCCACATCAACCGTTAACGATAAACGTGTCTCCAA
CAGGCTTACCTTTAATCTAATCTGATGAAGGCATTTTCTCAAGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_c01.g1 MSMg01no510_c01.g1 CHROMAT_FILE:
MSMg01no510_c01.g1 PHD_FILE: MSMg01no510_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:38 2005
         (659 letters)



>mm_chr7_13437966_13439029
          Length = 1064

 Score = 1178 bits (609), Expect = 0.0
 Identities = 648/669 (96%), Gaps = 15/669 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcttggaaccactataggccagctagccactgggggggggggg------agcagcatg 54
           |||||||||||||||||||||||| ||||||||||||||||||||      |||||||||
Sbjct: 201 actcttggaaccactataggccagttagccactgggggggggggggtggggagcagcatg 260

                                                                       
Query: 55  ggttaccaatggccaatcagtgtcttcaacaaagaccctgtgctggtcataagcaggtgg 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttaccaatggccaatcagtgtcttcaacaaagaccctgtgctggtcataagcaggtgg 320

                                                                       
Query: 115 ggtccaattgacctggcgttttcccaacttggagaggtgagataacatatctagggtttt 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtccaattgacctggcgttttcccaacttggagaggtgagataacatatctagggtttt 380

                                                                       
Query: 175 aaagaggatctaagggcttccagtgggaggaaagggtgagtccagttgggcccaccttct 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaggatctaagggcttccagtgggaggaaagggtgagtccagttgggcccaccttct 440

                                                                       
Query: 235 caatcattattttt----ccaccttctcaatcattaggtccagctggcagggaagagagt 290
           |||||||||         ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatcatta-----gggcccaccttctcaatcattaggtccagctggcagggaagagagt 495

                                                                       
Query: 291 tctgaggcagagttggaagttctataaggaccttagtttgtttcctattactgtgataaa 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tctgaggcagagttggaagttctataaggaccttagtttgtttcctattactgtgataaa 555

                                                                       
Query: 351 acaataccaaaagcaaattggggaggaaaaggtttgtttcatcttacacatccatcttga 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acaataccaaaagcaaattggggaggaaaaggtttgtttcatcttacacatccatcttga 615

                                                                       
Query: 411 gcacagtccctcattgagggaaagccaaggctgaaaatcaaacaggaacaagaactgaaa 470
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcactgtccctcattgagggaaagccaaggctgaaaatcaaacaggaacaagaactgaaa 675

                                                                       
Query: 471 taggagagggaagagtgctgcttaccagcttgctcctcgtgacttgctcagctcctttct 530
           |||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 676 taggagatagaagagtgctgcttaccagcttgctcctcgtgatttgctcagctcctttct 735

                                                                       
Query: 531 tatagaactcaggaccacttgcttaagggtgcaactgtccacattgggctgggctccccc 590
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 736 tatagaactcaggaccacttgcttaagggtgcaactgtccacattggactgggctccccc 795

                                                                       
Query: 591 acatcaaccgttaacgataaacgtgtctccaacaggcttacctttaatctaatctgatga 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 acatcaaccgttaacgataaacgtgtctccaacaggcttacctttaatctaatctgatga 855

                    
Query: 651 aggcatttt 659
           |||||||||
Sbjct: 856 aggcatttt 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1064
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1054
Effective search space:   684046
Effective search space used:   684046
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)