BAC Information

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BAC

Clone NameMSMg01-510C16
Chromosome7 (Build37)
Map Location 115,133,264 - 115,133,892
singlet/doubletsinglet
Overlap geneOlfr477
Upstream geneOlfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476
Downstream geneLOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510C16.T7 (MSMg01no510_c16.b1)MSMg01-510C16.TJ (MSMg01no510_c16.g1)
ACCAG583667AG583668
length739737
length of high quality
(start - end)
667 (73 - 739)233 (82 - 314)
definitionCHROMAT_FILE: MSMg01no510_c16.b1 PHD_FILE: MSMg01no510_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:41 2005CHROMAT_FILE: MSMg01no510_c16.g1 PHD_FILE: MSMg01no510_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCATXXXXXXXXXXXXXXXXXXXXXXXCTATTGCGACAGATGCGCGGA
ATTCTTTCATTTTGCTGTGGATTTGAGCCTCCATCTCAGGTGTGAAATGT
CCCTGTTGAAGATAATGAGAAAATTTTTTTGTTTACTATTTTTTCAATAC
TTTTTATATTTTTCTTTTTTTATCACATATTAATCCCATCCTTTTACCAA
AATTATAAATATTTGCCTTTTTAAGATTTAAAGATTGTGTTCCTTCTTTA
AATAGAATGTGAATAATGTTCTCACCCTTCTCTTTCCATTACCTTTCTCT
ATTTATGCAGTACTTATTTTTTGTTTCCTGAAATCTTGACTTCAGAGATC
TTTCCCTCAAGGTGGAGGTCCATAATTTCAATGATCCCTTGAGATTCTCC
TCATGCACACATCAATTAAGAATTCTCTAACCACTTTAAATTTTGTCATT
CCACAGTCTTCTTCAAAATCTCCACCAATATTTGATAATCTTTCTATGTA
TGTTTTTGTGTGTGGTTCTTTTGCCCACATGCATGTTTATATACCAGATG
TATGTCCTGTGCCTGGGGAGATCAGAAGATGTCATTAGATTTCCTGGAAG
TGGAATTATGGCCAGCTGTGAGCCACCATGTCAGTGCTAGTATAATCTGT
TTCTGCTGCAAGGACAGCCAGTGCTATTAACTGCTGAGCCATCTCTCCAA
GGCCCCTCTCCAGTCATCTCATTCATTCACAACGTCATG
CCGATGCAGTGGGAGGCCTGGGGGCCGCCTGGTTTCAAACTTGGGNGAAC
TANAGAAGGTTACAAGAAATGCGGAAGAANGAAGACCAAAGTGTGGACAC
TTTGCCCTTTCTTATAATTGGGAACAAAACACCCATGGAAAAAGTTACAG
TGTCAAAGTTTGGAGCTGAGATGAAAAGATGGACCATCTATCGACTGCCA
TACCTGGGGATTCATCCCATAATCTGCCTTCAAACACTGACACCATTTCA
TTCACTTGCAAGATTTTGCTGAAAGGACCCTGATATAGGTGTCTCTTGTG
AGGCTATGCTGGGTTCTTATTTTACACAGAAGTGGATGCTCACAGNCAGC
TATTGGATGGATCACAGGGTCCCCAATGGAGGAGCTACAGAAAGTACCCA
AAGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTA
ACCAGTACCCCCCCAGAGCTCCTGTCTCTAGCTGCGTATGTATCAGAATA
TGGTCTAGTCAGCCATCATTGGAGAGGCCCCTTGGTCTTGCAAACTTTAT
ATGCCTCAGTACAAGGGAACACCACGGCCAAGAAGAGGGAGTGCGTGTGT
AGGGGAGTCGCGGTGAGAGTGAGGGGGGACTTTTGGGATAGCTTTGTTTT
TTTAAATGAAGAAAATACCTAATAAATTTAAAACTATGTATATACAAACG
CGGATTTCACTTTGTTCTGATGTTTTTCCCCCAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_c16.b1 MSMg01no510_c16.b1 CHROMAT_FILE:
MSMg01no510_c16.b1 PHD_FILE: MSMg01no510_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:41 2005
         (667 letters)



>mm_chr7_115133264_115134329
          Length = 1066

 Score = 1135 bits (587), Expect = 0.0
 Identities = 619/635 (97%), Gaps = 11/635 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagcctccatctcaggtgtgaaatgtccctgttgaagataatgagaaaatttttttgt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 629 ttgagcctccatctcaggtgtgaaatgtccctgatgaagataatgagaaaatttttttgt 570

                                                                       
Query: 61  ttactattttttcaatactttttatatttttctttttttatcacatattaatcccatcct 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 569 ttactattttttcaatactttttatatttttc-ttttttatcacatattaatcccatcct 511

                                                                       
Query: 121 tttaccaaaattataaatatttgcctttttaagatttaaagattgtgttccttctttaaa 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tttaccaaaattataaatatctgcctttttaagatttaaagattgtgttccttctttaaa 451

                                                                       
Query: 181 tagaatgtgaataatgttctcacccttctctttccattacctttctctatttatgcagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tagaatgtgaataatgttctcacccttctctttccattacctttctctatttatgcagta 391

                                                                       
Query: 241 cttatttttt-----gtttcctgaaatcttgacttcagagatctttccctcaaggtggag 295
           ||||     |     |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctta-----tacaaagtttcctgaaatcttgacttcagagatctttccctcaaggtggag 336

                                                                       
Query: 296 gtccataatttcaatgatcccttgagattctcctcatgcacacatcaattaagaattctc 355
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 335 gtccataatttcaatgatctcttgagattctcctcatgcacacatcaattaagaatcctc 276

                                                                       
Query: 356 taaccactttaaattttgtcattccacagtcttcttcaaaatctccaccaatatttgata 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 taaccactttaaattttgtcattccacagtcttcttcaaaatctccaccaatatttgata 216

                                                                       
Query: 416 atctttctatgtatgtttttgtgtgtggttcttttgcccacatgcatgtttatataccag 475
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttctttctatgtatgtttttgtgtgtggttcttttgcccacatgcatgtttatataccag 156

                                                                       
Query: 476 atgtatgtcctgtgcctggggagatcagaagatgtcattagatttcctggaagtggaatt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atgtatgtcctgtgcctggggagatcagaagatgtcattagatttcctggaagtggaatt 96

                                                                       
Query: 536 atggccagctgtgagccaccatgtcagtgctagtataatctgtttctgctgcaaggacag 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  atggccagctgtgagccaccatgtcagtgctagtataatctgtttctgctgcaaggacag 36

                                              
Query: 596 ccagtgctattaactgctgagccatctctccaagg 630
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  ccagtgctattaactgctgagccatctctccaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space:   693792
Effective search space used:   693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)